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scnpilot_p_inoc_scaffold_3652_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_3652_curated_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..262)
DNA (261bp) protein (87aa)
Death-on-curing family protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PA65_9SPHN
Death-on-curing family protein {ECO:0000313|EMBL:EJL24037.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
doc; death-on-curing protein; K07341 death on curing protein
scnpilot_p_inoc_scaffold_3652_curated_2
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(263..490)
DNA (228bp) protein (76aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36CC3
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_p_inoc_scaffold_3652_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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626..1585
DNA (960bp) protein (320aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3R7_9SPHN
scnpilot_p_inoc_scaffold_3652_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1653..2639
DNA (987bp) protein (329aa)
RNA polymerase sigma factor RpoH n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLV0_9SPHN
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
scnpilot_p_inoc_scaffold_3652_curated_5
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2716..3114)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000360E3ED
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
scnpilot_p_inoc_scaffold_3652_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3198..3869
DNA (672bp) protein (224aa)
monofunctional biosynthetic peptidoglycan transglycosylase (EC:2.4.1.-); K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL93_9SPHN
Penicillin-binding protein 1F {ECO:0000313|EMBL:AKH42506.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_3652_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3875..4819
DNA (945bp) protein (315aa)
Putative CDF-family cation efflux system protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVJ9_9SPHN
Cadmium, cobalt and zinc/H(+)-K(+) antiporter {ECO:0000313|EMBL:AKH42505.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cation efflux system protein; K03295 cation efflux system protein, CDF family
scnpilot_p_inoc_scaffold_3652_curated_8
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4816..5304
DNA (489bp) protein (163aa)
glutathione-dependent formaldehyde-activating enzyme family protein (EC:4.4.1.22)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WUC8_9SPHN
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
scnpilot_p_inoc_scaffold_3652_curated_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5381..6142
DNA (762bp) protein (254aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F096_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHS53889.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
scnpilot_p_inoc_scaffold_3652_curated_10
unknown

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comp(6146..6391)
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_3652_curated_11
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6392..7660)
DNA (1269bp) protein (423aa)
ATP-dependent protease n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003667D40
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_3652_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7854..8558)
DNA (705bp) protein (235aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
clpP; ATP-dependent Clp protease proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y848_9SPHN
scnpilot_p_inoc_scaffold_3652_curated_13
unknown

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8561..8779
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_3652_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8810..9616
DNA (807bp) protein (269aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH42934.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_3652_curated_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9731..10780)
DNA (1050bp) protein (350aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Trigger factor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMU1_9SPHN
trigger factor; K03545 trigger factor
Displaying 15 items

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