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scnpilot_p_inoc_scaffold_7012_curated_1

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 2..268

Top 3 Functional Annotations

Value Algorithm Source
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.1
  • Coverage: 88.0
  • Bit_score: 143
  • Evalue 2.00e-31
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] similarity KEGG
DB: KEGG
  • Identity: 71.3
  • Coverage: 87.0
  • Bit_score: 128
  • Evalue 8.60e-28
Formamidopyrimidine-DNA glycosylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKT2_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 76.1
  • Coverage: 88.0
  • Bit_score: 143
  • Evalue 1.40e-31

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Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 267
AGCCCGCAGCGTGCGGGCGGCAAGGTCACAGGTGCTGCGCTCGAGCGGCTGGTGCCCGCCATCAAGCAGGTGCTGACCGAATCGATTGCCGATGGCGGCTCCACCCTGCGCGATTATGCCCGGCCCGATGGCGAGCTGGGCTATTTCGCGACCCGCTTCGATGTCTATGGGCGGGAGGCGGAGGATTGCCGCCGCTGCGGCGGCATTGTAAAACGCATTGCGCAAGGCGGGCGGAGCAGCTGGTATTGCCCCTCCTGCCAGAAATGA
PROTEIN sequence
Length: 89
SPQRAGGKVTGAALERLVPAIKQVLTESIADGGSTLRDYARPDGELGYFATRFDVYGREAEDCRRCGGIVKRIAQGGRSSWYCPSCQK*