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scnpilot_p_inoc_scaffold_7012_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_7012_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..268
DNA (267bp) protein (89aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Formamidopyrimidine-DNA glycosylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKT2_9SPHN
scnpilot_p_inoc_scaffold_7012_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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424..684
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS20_NOVAD
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
30S ribosomal protein S20 {ECO:0000255|HAMAP-Rule:MF_00500}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_7012_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1199..2620
DNA (1422bp) protein (474aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A357_9SPHN
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein
scnpilot_p_inoc_scaffold_7012_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2732..3157
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIN8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42687.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_7012_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3167..3934
DNA (768bp) protein (256aa)
Sulfur carrier protein MoaD adenylyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLC3_9SPHN
Sulfur carrier protein MoaD adenylyltransferase {ECO:0000313|EMBL:GAD49187.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
molybdopterin biosynthesis protein
scnpilot_p_inoc_scaffold_7012_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4050..4751)
DNA (702bp) protein (234aa)
NAD-dependent protein deacylase {ECO:0000313|EMBL:AKH42689.1}; EC=3.5.1.- {ECO:0000313|EMBL:AKH42689.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
NAD-dependent deacetylase; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y7K3_9SPHN
scnpilot_p_inoc_scaffold_7012_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4830..5597
DNA (768bp) protein (256aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000313|EMBL:AKH42690.1}; EC=1.17.1.8 {ECO:0000313|EMBL:AKH42690.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKS8_9SPHN
scnpilot_p_inoc_scaffold_7012_curated_8
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5629..6012
DNA (384bp) protein (128aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W9_9SPHN
Displaying 8 items

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