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scnpilot_p_inoc_scaffold_5056_curated_1

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(1..339)

Top 3 Functional Annotations

Value Algorithm Source
rluE; ribosomal large subunit pseudouridine synthase E; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] similarity KEGG
DB: KEGG
  • Identity: 78.2
  • Coverage: 110.0
  • Bit_score: 175
  • Evalue 1.30e-41
ribosomal large subunit pseudouridine synthase E n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B61B22 similarity UNIREF
DB: UNIREF100
  • Identity: 84.1
  • Coverage: 113.0
  • Bit_score: 195
  • Evalue 3.00e-47
Pseudouridine synthase {ECO:0000313|EMBL:AJP72139.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.4
  • Coverage: 113.0
  • Bit_score: 184
  • Evalue 9.80e-44

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 339
GTGGCGCGGTTGACCCTGTTCAACAAACCCTACGGGGTGCTTTCTCAATTCACCGATCGCGGCACGGAGACTGCGCGCCAGACGCTGTCCGATTTCATCGCCCTGCCCGGCGTTTATCCCGCTGGCCGGCTGGATCGCGATAGCGAGGGGCTGCTCCTGTTGACGGATGATGGGCGCCTTCAGGCCCGCATTGCCGATCCGCGGTTCAAATTACCCAAGACATATCTGGTGCAGGTGGAAGGCGAGCCGAGCGAGGCTGGCCTTGAAGCCTTGCGAACCGGCATCCGTCTGAATGACGGCCCCACACGCCCAGCAGAAGTCGAGCGGATCGCCGATCCC
PROTEIN sequence
Length: 113
VARLTLFNKPYGVLSQFTDRGTETARQTLSDFIALPGVYPAGRLDRDSEGLLLLTDDGRLQARIADPRFKLPKTYLVQVEGEPSEAGLEALRTGIRLNDGPTRPAEVERIADP