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scnpilot_p_inoc_scaffold_5056_curated_2

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(407..2413)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMY4_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 667.0
  • Bit_score: 1144
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 667.0
  • Bit_score: 1144
  • Evalue 0.0
RNA polymerase primary sigma factor; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 86.2
  • Coverage: 673.0
  • Bit_score: 1106
  • Evalue 0.0

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Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2007
ATGTCCGACAAAAAAGACGATGATGCCCCGCTGATCGACCTCAACGAAGCTTCGATCAAGAAGCTCATCGCGAAGGCGAAGCGCCGTGGCTACATCACTTATGACGAGCTGAACGAAGCTCTGCCGCAAGACGAACTGTCTTCCGAGCAGATCGAGGACGTTATGTCCGCGATCTCGGAAATGGGCGTCAACATCGTCGAGAGCGACGAGGATGCGGAAGGGCAGGAAGAGGACAATAACGTCGACGAGGCAAACTCCTCCGACGAGGCCGATGAAGGCCGCAATGTCCCCGAAGCTCCGCGCAAGGCCGGCACTGGCGAGCGTACCGATGACCCGGTGCGCATGTATCTGCGCGAAATGGGCGCGGTGGAGCTCCTCAGCCGCGAAGGCGAAATCGCCATCGCCAAGCGCATCGAGGCCGGCCGTGACACGATGATCCTGGGCCTGTGCGAAAGCCCGATCACCTTCCACGCAATCATCCAGTGGTCCGAAGCGCTCAATAACGGCGAGATGCAGCTGCGCGAGATCCTCGATCTCGATGCGATGCTCTCCAAGGAGCCTCCGGTCGAGCGCATGGAGGAAGAAGGCGACGATAACGGCGAGATCAGCGAGGAAACCGCTGGTCCTTCCTACAAGGAAGATGACGAGATCGAGGAAGAGGAAGAGGCCGATTCCGACGAGGATGGCGAAGACGGTGAAGGCCGCTCGCGCCGCCGCGAGGAAGAGGACGAAGAGGATAACACCCTCTCCCTCGCCCAGATGGAAGCCGCGCTGAAGCCCGAAGCGCTGGAACGCTTTGCCCGCATCGCGGACCTGTTCAAGAAGTTCGAGAAGCTCCAGGCCGAGCGCGTGGACGCACTGGGCCGCGGCGAGGATTTCCCCGCCGCCAAGGAAAAGAAGTACGAACAGCTGCGCGAAGATCTCACCGCCGAGGTAGAGAGCGTGCAGTTCCACGCGACCAAGATCGAATATCTGGTCGACAATCTCTATGCCTTCAACCGGCGTCTCACCACGCTGGGCGGCCAGATGCTGCGCCTTGCGGAACGCCACAAGGTGAAGCGCGGTGATTTCCTCGATGCCTATGTCGGCAATGAGATGGACGACGCATGGCTCGCCGCCATGGCGAAGAAGGACAAGAAGTGGGCCGCCTTCGCCGAGAAGGAAGCCGAGCCGGTAGAGCGCATCCGCGCCGAAATCTCGGACATTGCCAGCCAGACCGGCATGAGCCTGAACGAATTCCGCCGCATCGTGAACATGGTGCAGAAGGGCGAGCGTGAAGCGCGCATCGCGAAGAAGGAGATGGTGGAAGCCAATCTCCGCCTCGTGATCTCCATCGCCAAAAAATACACCAATCGCGGCCTGCAATTCCTCGACCTGATTCAGGAAGGAAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAGTATCGCCGCGGCTACAAGTTCAGCACCTATGCAACCTGGTGGATCAGGCAGGCAATCACCCGGTCCATCGCGGACCAGGCCCGCACGATCCGCATCCCGGTCCATATGATCGAGACGATCAACAAGCTGGTGCGTACCAGCCGCCAGTTCCTGCATGAACAGGGCCGTGAACCGACACCGGAGGAAATGGCCGAACGCCTTTCCATGCCGCTGGAAAAGGTCCGCAAGGTGATGAAGATCGCCAAGGAGCCGATCAGCCTCGAAACGCCTATCGGCGATGAGGAAGATTCGCATCTGGGCGATTTCATCGAGGACAAGAACGCGATCATCCCCGTGGATGCCGCGATCCAGTCCAACCTCAAGGAAACGGTCACGCGCGTGCTGGCCAGCCTCACCCCCCGCGAGGAACGCGTGCTGCGCATGCGTTTCGGTATCGGCATGAATACCGATCATACGCTGGAGGAAGTGGGTCAGCAATTCTCGGTTACCCGCGAACGTATTCGCCAGATCGAAGCGAAGGCGCTGAGGAAGCTCAAGCATCCCAGCCGCAGCCGCAAGATGCGCAGCTTCCTCGATCAGTAA
PROTEIN sequence
Length: 669
MSDKKDDDAPLIDLNEASIKKLIAKAKRRGYITYDELNEALPQDELSSEQIEDVMSAISEMGVNIVESDEDAEGQEEDNNVDEANSSDEADEGRNVPEAPRKAGTGERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFHAIIQWSEALNNGEMQLREILDLDAMLSKEPPVERMEEEGDDNGEISEETAGPSYKEDDEIEEEEEADSDEDGEDGEGRSRRREEEDEEDNTLSLAQMEAALKPEALERFARIADLFKKFEKLQAERVDALGRGEDFPAAKEKKYEQLREDLTAEVESVQFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVKRGDFLDAYVGNEMDDAWLAAMAKKDKKWAAFAEKEAEPVERIRAEISDIASQTGMSLNEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQSNLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ*