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scnpilot_p_inoc_scaffold_5056_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_5056_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..339)
DNA (339bp) protein (113aa)
rluE; ribosomal large subunit pseudouridine synthase E; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
ribosomal large subunit pseudouridine synthase E n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B61B22
Pseudouridine synthase {ECO:0000313|EMBL:AJP72139.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
scnpilot_p_inoc_scaffold_5056_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(407..2413)
DNA (2007bp) protein (669aa)
RNA polymerase sigma factor RpoD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMY4_9SPHN
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
RNA polymerase primary sigma factor; K03086 RNA polymerase primary sigma factor
scnpilot_p_inoc_scaffold_5056_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2425..4332)
DNA (1908bp) protein (636aa)
DNA primase {ECO:0000313|EMBL:AKH41479.1}; EC=2.7.7.- {ECO:0000313|EMBL:AKH41479.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y993_9SPHN
scnpilot_p_inoc_scaffold_5056_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4396..4848)
DNA (453bp) protein (151aa)
GatB/Yqey n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G653_NOVAD
hypothetical protein; K09117 hypothetical protein
GatB/Yqey {ECO:0000313|EMBL:ABD26670.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_5056_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5006..6169
DNA (1164bp) protein (388aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZWW9_9SPHN
scnpilot_p_inoc_scaffold_5056_curated_6
unknown

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6169..6660
DNA (492bp) protein (164aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_5056_curated_7
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6703..7533
DNA (831bp) protein (277aa)
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116, ECO:0000313|EMBL:CCA93286.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6R2_9SPHN
Displaying 7 items

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