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SCNpilot_BF_INOC_scaffold_4041

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_4041_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..591)
DNA (591bp) protein (197aa)
obgE, cgtA, obg, yhbZ; GTPase ObgE; K03979 GTP-binding protein id=12494408 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
obgE; GTPase ObgE
GTPase Obg {ECO:0000255|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000255|HAMAP-Rule:MF_01454}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogen
SCNpilot_BF_INOC_scaffold_4041_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(673..936)
DNA (264bp) protein (88aa)
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 id=12494407 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rpmA; 50S ribosomal protein L27
SCNpilot_BF_INOC_scaffold_4041_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1268..2332
DNA (1065bp) protein (355aa)
trans-hexaprenyltranstransferase (EC:2.5.1.30); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] id=12494405 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
trans-hexaprenyltranstransferase (EC:2.5.1.30); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
trans-hexaprenyltranstransferase (EC:2.5.1.30)
SCNpilot_BF_INOC_scaffold_4041_4
unknown

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2584..3249
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_4041_5
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3812..4729)
DNA (918bp) protein (306aa)
Type II restriction enzyme XamI n=3 Tax=Xanthomonas RepID=Q8PJU3_XANAC
Restriction endonuclease XamI {ECO:0000313|EMBL:KES23869.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
XamI restriction endonuclease
SCNpilot_BF_INOC_scaffold_4041_6
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4726..6309)
DNA (1584bp) protein (528aa)
XamI DNA methyltransferase n=2 Tax=Xanthomonas campestris pv. citri RepID=Q8PJU4_XANAC
putative O-methyltransferase
XamI DNA methyltransferase {ECO:0000313|EMBL:AAM37287.1}; TaxID=190486 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axo
SCNpilot_BF_INOC_scaffold_4041_7
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6375..7397)
DNA (1023bp) protein (341aa)
Phage integrase family protein n=1 Tax=mine drainage metagenome RepID=T1AT42_9ZZZZ
Shufflon-specific DNA recombinase {ECO:0000313|EMBL:KFZ91427.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
phage integrase family protein
SCNpilot_BF_INOC_scaffold_4041_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7805..8224
DNA (420bp) protein (140aa)
Fur family ferric uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator id=12494392 bin=THIO_HI species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:EIJ33595.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix ni
Fur family ferric uptake regulator
SCNpilot_BF_INOC_scaffold_4041_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8262..9074)
DNA (813bp) protein (271aa)
hypothetical protein id=12494393 bin=THIO_HI species=Rubrivivax gelatinosus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97792.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 10
SCNpilot_BF_INOC_scaffold_4041_10
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9087..9836)
DNA (750bp) protein (250aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] id=12494394 bin=THIO_HI species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACL56324.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
SCNpilot_BF_INOC_scaffold_4041_11
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9833..10816)
DNA (984bp) protein (328aa)
transport system permease; K02015 iron complex transport system permease protein id=12494395 bin=THIO_HI species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transport system permease
Transport system permease protein {ECO:0000313|EMBL:ACL56323.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacter
SCNpilot_BF_INOC_scaffold_4041_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10818..11705)
DNA (888bp) protein (296aa)
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein id=12494396 bin=THIO_HI species=Chryseobacterium taeanense genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=THIO_HI organism_group=Betaproteobacteria
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:EPD37657.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" s
ABC transporter substrate-binding protein
SCNpilot_BF_INOC_scaffold_4041_13
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11715..11951)
DNA (237bp) protein (79aa)
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein id=12494397 bin=THIO_HI species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
TonB-dependent receptor {ECO:0000313|EMBL:EFH12930.1}; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="
TonB-dependent receptor
Displaying 13 items

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