ggKbase home page

SCNpilot_BF_INOC_scaffold_1471

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1471_1
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..674)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038034CA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34893.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
SCNpilot_BF_INOC_scaffold_1471_2
Thiobacillus thioparus, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(960..1115)
DNA (156bp) protein (52aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003792152
SCNpilot_BF_INOC_scaffold_1471_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1112..1750)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367AD0E
partition protein A
Partition protein A {ECO:0000313|EMBL:AAZ98594.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denit
SCNpilot_BF_INOC_scaffold_1471_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1757..2026)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D29F6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98595.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
SCNpilot_BF_INOC_scaffold_1471_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2019..2468)
DNA (450bp) protein (150aa)
bacterioferritin n=1 Tax=Thiobacillus thioparus RepID=UPI00037EF05A
bacterioferritin; K03594 bacterioferritin Tax=GWE1_Thiobacillus_62_9_curated
bacterioferritin
SCNpilot_BF_INOC_scaffold_1471_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2482..2865)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036FC4D6
carboxysome structural peptide CsoS1B
Carboxysome structural peptide CsoS1B {ECO:0000313|EMBL:AAG60043.1}; TaxID=36861 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
SCNpilot_BF_INOC_scaffold_1471_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2878..3177)
DNA (300bp) protein (100aa)
Carboxysome shell protein CsoS1A n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFK8_THIDA
carboxysome shell protein CsoS1A
Carboxysome shell protein CsoS1A {ECO:0000313|EMBL:AAZ98598.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiob
SCNpilot_BF_INOC_scaffold_1471_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3213..3512)
DNA (300bp) protein (100aa)
Carboxysome shell protein, CsoS1C n=3 Tax=Thiobacillus RepID=Q3SES1_THIDA
carboxysome shell protein, CsoS1C
Carboxysome shell protein, CsoS1C {ECO:0000313|EMBL:AAZ98599.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thio
SCNpilot_BF_INOC_scaffold_1471_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3525..3815)
DNA (291bp) protein (97aa)
carboxysome shell protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A8FB8
carboxysome protein B
Carboxysome protein B {ECO:0000313|EMBL:AAZ98600.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus den
SCNpilot_BF_INOC_scaffold_1471_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3817..4074)
DNA (258bp) protein (86aa)
Carboxysome protein A n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SER9_THIDA
carboxysome protein A
Carboxysome protein A {ECO:0000313|EMBL:AAZ98601.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus den
SCNpilot_BF_INOC_scaffold_1471_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4084..5658)
DNA (1575bp) protein (525aa)
carboxysome shell protein CsoS3, carbonic anhydrase epsilon (EC:4.2.1.1) Tax=GWE1_Thiobacillus_62_9_curated
carboxysome shell protein CsoS3, carbonic anhydrase epsilon (EC:4.2.1.1)
Carboxysome shell protein CsoS3, carbonic anhydrase epsilon id=1372689 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_BF_INOC_scaffold_1471_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5684..7672)
DNA (1989bp) protein (663aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035E39BE
carboxysome structural protein CsoS2
Carboxysome structural protein CsoS2 {ECO:0000313|EMBL:AAZ98603.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
SCNpilot_BF_INOC_scaffold_1471_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7844..8794
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI0003739297
cbbR3; transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
cbbR3; transcriptional regulator
SCNpilot_BF_INOC_scaffold_1471_14
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8824..9747)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GVC7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA89254.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="T
SCNpilot_BF_INOC_scaffold_1471_15
unknown

Not on your lists

comp(9811..9978)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1471_16
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9990..12470)
DNA (2481bp) protein (827aa)
UPF0753 protein Thimo_2946 n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GY02_9GAMM
UPF0753 protein Thpro_00475 {ECO:0000256|HAMAP-Rule:MF_01871}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1471_17
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12473..14098)
DNA (1626bp) protein (542aa)
NADH:ubiquinone oxidoreductase subunit 5 (Chain L)/multisubunit Na+/H+ antiporter, MnhA subunit n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0H0Q0_9GAMM
NADH:ubiquinone oxidoreductase subunit L/multisubunit Na+/H+ antiporter, MnhA subunit
NADH:ubiquinone oxidoreductase subunit 5 (Chain L)/multisubunit Na+/H+ antiporter, MnhA subunit {ECO:0000313|EMBL:AGA91637.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammap
SCNpilot_BF_INOC_scaffold_1471_18
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14243..15151
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI0003813682
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA91636.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source=
SCNpilot_BF_INOC_scaffold_1471_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15276..15602)
DNA (327bp) protein (109aa)
nitrogen regulatory protein P-II n=1 Tax=Thiobacillus thioparus RepID=UPI00036D7B47
nitrogen regulatory protein P-II Tax=GWE1_Thiobacillus_62_9_curated
nitrogen regulatory protein P-II
SCNpilot_BF_INOC_scaffold_1471_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15599..18718)
DNA (3120bp) protein (1040aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A6811
hypothetical protein; K09822 hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1471_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18715..19458)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003740E5D
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1471_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19460..20524)
DNA (1065bp) protein (355aa)
NADH dehydrogenase (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=GWE1_Thiobacillus_62_9_curated
NADH dehydrogenase (EC:1.6.99.5)
oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI000381E6B3
SCNpilot_BF_INOC_scaffold_1471_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21443..22387)
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00036348EF
cbbR1; transcriptional regulator Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
cbbR1; transcriptional regulator
SCNpilot_BF_INOC_scaffold_1471_24
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22547..23614
DNA (1068bp) protein (356aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain {ECO:0000256|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000256|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000256|HAMAP-Rule:MF_01338};; TaxID=5
Ribulose bisphosphate carboxylase large chain n=2 Tax=Bacteria RepID=D5CQ59_SIDLE
SCNpilot_BF_INOC_scaffold_1471_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23602..23934
DNA (333bp) protein (111aa)
cbbL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (EC:4.1.1.39) Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ribulose bisphosphate carboxylase large subunit (EC:4.1.1.39)
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (RuBisCO large subunit) n=1 Tax=mine drainage metagenome RepID=E6PR79_9ZZZZ
SCNpilot_BF_INOC_scaffold_1471_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24027..24383
DNA (357bp) protein (119aa)
cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS) (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] Tax=GWE1_Thiobacillus_62_
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
ribulose bisphosphate carboxylase small chain n=1 Tax=Thiobacillus thioparus RepID=UPI00036681CE
SCNpilot_BF_INOC_scaffold_1471_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24538..25341
DNA (804bp) protein (268aa)
ATPase AAA n=1 Tax=Thiobacillus thioparus RepID=UPI00037D96A3
cbbQ; Rubisco activation protein; K04748 nitric oxide reductase NorQ protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cbbQ; Rubisco activation protein
SCNpilot_BF_INOC_scaffold_1471_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25435..27792
DNA (2358bp) protein (786aa)
von Willebrand factor A n=1 Tax=Thiobacillus thioparus RepID=UPI0003621E4A
cbbO1; rubisco activation protein CbbO Tax=GWE1_Thiobacillus_62_9_curated
cbbO1; rubisco activation protein CbbO
SCNpilot_BF_INOC_scaffold_1471_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27994..28200)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003661B42
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_1471_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29234..29473
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003663CE5
spermidine synthase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
Displaying items 1-30 of 61 in total

View Taxonomy