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SCNpilot_BF_INOC_scaffold_2884

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2884_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..159
DNA (159bp) protein (53aa)
type II secretory protein GspE n=1 Tax=Thiobacillus thioparus RepID=UPI00036CA70B
type IV pilus assembly protein, PilB
Type IV pilus assembly protein, PilB {ECO:0000313|EMBL:AAZ98323.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
SCNpilot_BF_INOC_scaffold_2884_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

172..1395
DNA (1224bp) protein (408aa)
type II secretion system protein F n=1 Tax=Thiobacillus thioparus RepID=UPI00037135CB
type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=GWE1_Thiobacillus_62_9_curated
type IV pilus assembly protein PilC rbh
SCNpilot_BF_INOC_scaffold_2884_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1392..2246
DNA (855bp) protein (285aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=12493284 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
type 4 prepilin peptidase 1 (EC:3.4.23.43)
SCNpilot_BF_INOC_scaffold_2884_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2246..2854
DNA (609bp) protein (203aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=1368674 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_BF_INOC_scaffold_2884_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2907..3662
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003787C5C
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2884_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3659..3856
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FC1CE
hypothetical protein; K09862 hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2884_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3860..4147)
DNA (288bp) protein (96aa)
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
cbbI; ribose-5-phosphate isomerase A (EC:5.3.1.6)
ribose 5-phosphate isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036AF4D3
SCNpilot_BF_INOC_scaffold_2884_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4570..6087
DNA (1518bp) protein (506aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=292415 species="Bacteria; Proteobacter
L-threonine dehydratase biosynthetic IlvA n=1 Tax=Thiobacillus thioparus RepID=UPI00037B9CF0
SCNpilot_BF_INOC_scaffold_2884_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6149..8113
DNA (1965bp) protein (655aa)
SLT domain-containing protein; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368CB93
SLT domain-containing protein
SCNpilot_BF_INOC_scaffold_2884_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8211..9248
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C8E29
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:AAZ98314.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source
SCNpilot_BF_INOC_scaffold_2884_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9713..10474
DNA (762bp) protein (254aa)
metal dependent phosphohydrolase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A355F
metal dependent phosphohydrolase
SCNpilot_BF_INOC_scaffold_2884_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10601..11347
DNA (747bp) protein (249aa)
ferredoxin-NADP reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ferredoxin--NADP reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00036DC510
ferredoxin-NADP reductase
SCNpilot_BF_INOC_scaffold_2884_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11383..13263
DNA (1881bp) protein (627aa)
kup; potassium transport system protein kup; K03549 KUP system potassium uptake protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
kup3; potassium transporter; K03549 KUP system potassium uptake protein id=12493294 bin=THIO_HI species=Cupriavidus sp. UYPR2.512 genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
kup; potassium transport system protein kup
SCNpilot_BF_INOC_scaffold_2884_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13322..13696)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381DC0B
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2884_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13740..14327)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F89E9
putative outer membrane lipoprotein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
outer membrane lipoprotein
SCNpilot_BF_INOC_scaffold_2884_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14373..14663)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003731385
hypothetical protein
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_BF_INOC_scaffold_2884_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14812..15525
DNA (714bp) protein (238aa)
chemotaxis protein CheY n=1 Tax=Thiobacillus thioparus RepID=UPI00037AC723
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator Tax=GWE1_Thiobacillus_62_9_curated
two component transcriptional regulator
SCNpilot_BF_INOC_scaffold_2884_18
unknown

Not on your lists

comp(15495..16226)
DNA (732bp) protein (244aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2884_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16934..17086)
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037704F2
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_2884_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17360..18199
DNA (840bp) protein (280aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037C8D31
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 Tax=GWE1_Thiobacillus_62_9_curated
ABC transporter ATPase
Displaying 20 items

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