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SCNpilot_BF_INOC_scaffold_1252

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1252_1
Veillonella montpellierensis, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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603..809
DNA (207bp) protein (69aa)
Protein translocase subunit SecE n=4 Tax=Veillonella parvula RepID=D1BP80_VEIPT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1401067 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella mon
preprotein translocase subunit SecE
SCNpilot_BF_INOC_scaffold_1252_2
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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851..1378
DNA (528bp) protein (176aa)
Transcription termination/antitermination protein NusG n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLC7_ALKOO
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
SCNpilot_BF_INOC_scaffold_1252_3
Exiguobacterium pavilionensis, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

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1393..1818
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Exiguobacterium pavilionensis RW-2 RepID=U1LY20_9BACL
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1345023 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguob
rplK; 50S ribosomal protein L11
SCNpilot_BF_INOC_scaffold_1252_4
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1879..2571
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2E3_CLOA9
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rplA; 50S ribosomal protein L1
SCNpilot_BF_INOC_scaffold_1252_5
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2753..3253
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CY38_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;"
rplJ; 50S ribosomal protein L10
SCNpilot_BF_INOC_scaffold_1252_6
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3293..3658
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sp. BL8 RepID=T0MUY9_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense
rplL; 50S ribosomal protein L7/L12
SCNpilot_BF_INOC_scaffold_1252_7
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3912..7601
DNA (3690bp) protein (1230aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RPOB_ALKMQ
SCNpilot_BF_INOC_scaffold_1252_8
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7633..11157
DNA (3525bp) protein (1175aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CS66_9CLOT
DNA-directed RNA polymerase subunit beta'
SCNpilot_BF_INOC_scaffold_1252_9
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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11237..11485
DNA (249bp) protein (83aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TRU8_THETC
50S ribosomal protein L7Ae/L30e/S12e/Gadd45
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:ADL67995.1}; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis
SCNpilot_BF_INOC_scaffold_1252_10
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11517..11933
DNA (417bp) protein (139aa)
30S ribosomal protein S12 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RS12_ALKMQ
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
rpsL; 30S ribosomal protein S12
SCNpilot_BF_INOC_scaffold_1252_11
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12065..12535
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E6A7_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rpsG; 30S ribosomal subunit protein S7
SCNpilot_BF_INOC_scaffold_1252_12
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12600..14666
DNA (2067bp) protein (689aa)
Elongation factor G n=1 Tax=Clostridium difficile CD160 RepID=T3DPK5_CLODI
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pep
fusA; elongation factor G
SCNpilot_BF_INOC_scaffold_1252_13
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14689..14784
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGT6_BRESC
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacter
Displaying 13 items

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