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SCNpilot_BF_INOC_scaffold_690

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_690_1
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGT6_BRESC
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacter
SCNpilot_BF_INOC_scaffold_690_2
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(164..796)
DNA (633bp) protein (211aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:KGG79663.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KGG79663.1};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloran
RNA polymerase sigma-70 factor n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC39_HELMI
rpoE; RNA polymerase factor sigma-70
SCNpilot_BF_INOC_scaffold_690_3
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(916..1656)
DNA (741bp) protein (247aa)
RNA 2'-O ribose methyltransferase substrate binding family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4W0K7_CLOBI
RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EQK46601.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptocl
tRNA/rRNA methyltransferase
SCNpilot_BF_INOC_scaffold_690_4
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1666..2433)
DNA (768bp) protein (256aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408}
thyX; thymidylate synthase, flavin-dependent (EC:2.1.1.148)
Thymidylate synthase ThyX n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0A3_9FIRM
SCNpilot_BF_INOC_scaffold_690_5
unknown

Not on your lists

comp(2446..2748)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_690_6
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2738..3217)
DNA (480bp) protein (160aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01
Mini-ribonuclease 3 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ASG0_9CLOT
ribonuclease III
SCNpilot_BF_INOC_scaffold_690_7
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3285..4766)
DNA (1482bp) protein (494aa)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
Glutamate--tRNA ligase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=SYE_ALKOO
gltX; glutamyl-tRNA synthetase
SCNpilot_BF_INOC_scaffold_690_8
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4799..5056)
DNA (258bp) protein (86aa)
Cysteine-rich small domain n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIV8_ALKOO
Cysteine-rich small domain protein {ECO:0000313|EMBL:GAF03363.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis
hypothetical protein
SCNpilot_BF_INOC_scaffold_690_9
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5059..5535)
DNA (477bp) protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=ISPF_PELCD
ispF; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00107}; Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_00107}
SCNpilot_BF_INOC_scaffold_690_10
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(5532..6248)
DNA (717bp) protein (239aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RBG_13_Caldithrix_44_9_curated
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000372F3D0
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
SCNpilot_BF_INOC_scaffold_690_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6409..7518)
DNA (1110bp) protein (370aa)
PIN domain protein n=7 Tax=Clostridium difficile RepID=D5Q1S8_CLODI
PilT domain-containing protein
Putative membrane protein {ECO:0000313|EMBL:CCK93151.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
SCNpilot_BF_INOC_scaffold_690_12
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7614..8096)
DNA (483bp) protein (161aa)
Transcriptional regulator, CarD family n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B426_CLOA9
CarD family transcriptional regulator
Transcriptional regulator, CarD family {ECO:0000313|EMBL:AFS79316.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC
SCNpilot_BF_INOC_scaffold_690_13
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8301..8696
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LF60_THEPS
hypothetical protein
Tax=BJP_IG2158_Thermincola_46_17
SCNpilot_BF_INOC_scaffold_690_14
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8826..10187)
DNA (1362bp) protein (454aa)
DNA repair protein RadA (EC:2.1.1.63)
DNA repair protein radA n=1 Tax=Caloramator australicus RC3 RepID=G0V3X8_9CLOT
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
SCNpilot_BF_INOC_scaffold_690_15
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10196..12631)
DNA (2436bp) protein (812aa)
ATPase AAA-2 domain protein n=2 Tax=root RepID=R6MHZ8_9FIRM
CLPC2; Chaperone protein ClpC2, chloroplastic
Chaperone protein ClpC2, chloroplastic {ECO:0000313|EMBL:CDZ23627.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium]
SCNpilot_BF_INOC_scaffold_690_16
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12766..14847)
DNA (2082bp) protein (694aa)
Translation elongation factor G-related protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWW6_9CLOT
Translation elongation factor G-related protein {ECO:0000313|EMBL:EOD01142.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Cald
translation elongation factor 2 (EF-2/EF-G)
SCNpilot_BF_INOC_scaffold_690_17
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(15142..17493)
DNA (2352bp) protein (784aa)
ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.2); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=GWB2_Clostridiales_37_7_curated
ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.2)
Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent id=2094775 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
SCNpilot_BF_INOC_scaffold_690_18
Paenibacillus sp. IHBB 10380, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17752..19053)
DNA (1302bp) protein (434aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|R
Glucose-6-phosphate isomerase n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9G9M2_9BACL
glucose-6-phosphate isomerase
SCNpilot_BF_INOC_scaffold_690_19
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19076..20023)
DNA (948bp) protein (316aa)
Glucokinase {ECO:0000313|EMBL:CDF57215.1}; EC=2.7.1.2 {ECO:0000313|EMBL:CDF57215.1};; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="T
Glucokinase n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RPQ7_9CLOT
ROK family glucokinase
SCNpilot_BF_INOC_scaffold_690_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20056..22422)
DNA (2367bp) protein (789aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clo
Phosphorylase n=1 Tax=Clostridium novyi (strain NT) RepID=A0PXG5_CLONN
glycogen phosphorylase rbh
SCNpilot_BF_INOC_scaffold_690_21
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22476..24653)
DNA (2178bp) protein (726aa)
putative alpha-glucosidase (EC:3.2.1.20)
Probable alpha-glucosidase n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A7A5_CLOBO
Alpha-glucosidase {ECO:0000313|EMBL:KGN03135.1}; TaxID=1444290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4570.;"
SCNpilot_BF_INOC_scaffold_690_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24677..25693)
DNA (1017bp) protein (339aa)
LacI family transcriptional regulator n=1 Tax=Clostridium tunisiense RepID=UPI0002FD75AE
LacI family transcriptional regulator {ECO:0000313|EMBL:KGN00572.1}; TaxID=1443128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinu
alanine racemase
SCNpilot_BF_INOC_scaffold_690_23
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25867..26946
DNA (1080bp) protein (360aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1202534 species="Bacteria; Firmicutes; Clostr
DNA polymerase IV n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CD93_9CLOT
nucleotidyltransferase/DNA polymerase involved in DNA repair
Displaying 23 items

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