ggKbase home page

SCNpilot_BF_INOC_scaffold_0_75

Organism: SCNpilot_BF_INOC_Clostridium_37_18

near complete RP 48 / 55 MC: 5 BSCG 50 / 51 MC: 4 ASCG 14 / 38 MC: 4
Location: 93298..94032

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pep similarity UNIPROT
DB: UniProtKB
  • Identity: 56.4
  • Coverage: 234.0
  • Bit_score: 266
  • Evalue 4.30e-68
rluA; ribosomal small subunit pseudouridine synthase A (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 234.0
  • Bit_score: 262
  • Evalue 1.20e-67
Pseudouridine synthase n=1 Tax=Clostridium difficile P29 RepID=T4P402_CLODI similarity UNIREF
DB: UNIREF100
  • Identity: 56.0
  • Coverage: 234.0
  • Bit_score: 267
  • Evalue 1.00e-68

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 735
ATGGGTGAAAAAATAAGGTTGGATAAGCTTTTATCCAACATGGGCAAGGGCTCAAGAAGTGAAATGAAGGATGCACTTCGATTTGGCGGGGTTAAAGTCAATGGCGTTACTGTAAGAACTGGGAAAGAGAAGGTGGATCCTGAAAAGGATGAAATTTTATATAAAGGGATCCAAGTTGTCTATGTAAAGCATGTCTATTTAATTCTTAATAAGCCAGATGGTTATATTTCAGCCACTGAGGATAAATTTCATAAAACGGTACTCGAGTTAATCAGTTCTGATTTTGATCACTACGAATTGTTTCCAGTTGGAAGATTGGATATTGATACAGAGGGACTGTTAATTATTACCAATGATGGTGAACTAGCGCACAATCTTTTAGCACCTAAAAAACATGTCCCGAAGACCTATAGAGCAATTATCAATGGACCTTTAGGTGATTTGGCAATAAAGCAGTTTGAGGAGGGCATCAGCCTAGATGATGGCTATAAGTGTAAGCCGGCTGAGCTCGAAATTATTAGCACATCAAAATCCGAAAGTGAGGTTAAACTCACCATCCACGAAGGTAAGTTTCATCAGGTAAAGCGGATGTTTGAAGCGATAGATTTAAAGGTTACCTATTTACAAAGAATAAAAATGAATGGCCTATCTCTTCCTGATGATTTACCAGTAGGTGAATTTAGACCGCTCACTGAGGAAGAGTTTGTTGCTTTAACTCAAGGGATTGATCTATAA
PROTEIN sequence
Length: 245
MGEKIRLDKLLSNMGKGSRSEMKDALRFGGVKVNGVTVRTGKEKVDPEKDEILYKGIQVVYVKHVYLILNKPDGYISATEDKFHKTVLELISSDFDHYELFPVGRLDIDTEGLLIITNDGELAHNLLAPKKHVPKTYRAIINGPLGDLAIKQFEEGISLDDGYKCKPAELEIISTSKSESEVKLTIHEGKFHQVKRMFEAIDLKVTYLQRIKMNGLSLPDDLPVGEFRPLTEEEFVALTQGIDL*