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SCNpilot_BF_INOC_scaffold_0

Search features with annotation key words

Displaying items 61-90 of 619 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_0_61
unknown

Not on your lists

78280..78645
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_0_62
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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78671..79417
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P9U3_DEFDS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI81483.1}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (str
SCNpilot_BF_INOC_scaffold_0_63
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

79430..79957
DNA (528bp) protein (176aa)
Regulatory protein RecX n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BCY3_CLOBO
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=445337 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
recX; recombination regulator RecX
SCNpilot_BF_INOC_scaffold_0_64
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(79874..81766)
DNA (1893bp) protein (631aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
ATP-dependent DNA helicase, UvrD/REP family (EC:3.6.4.12)
UvrD/REP helicase n=1 Tax=Clostridium ultunense Esp RepID=M1Z5I3_9CLOT
SCNpilot_BF_INOC_scaffold_0_65
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

82045..83331
DNA (1287bp) protein (429aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CLM7_9CLOT
tig; trigger factor
SCNpilot_BF_INOC_scaffold_0_66
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

83352..83936
DNA (585bp) protein (195aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003712143
Clp protease
SCNpilot_BF_INOC_scaffold_0_67
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

83963..85249
DNA (1287bp) protein (429aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AR31_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
SCNpilot_BF_INOC_scaffold_0_68
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85341..87671
DNA (2331bp) protein (777aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TM66_ALKMQ
SCNpilot_BF_INOC_scaffold_0_69
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

87668..88315
DNA (648bp) protein (216aa)
Probable GTP-binding protein EngB n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=ENGB_ALKMQ
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;
engB; ribosome biogenesis GTP-binding protein YsxC
SCNpilot_BF_INOC_scaffold_0_70
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

88327..88848
DNA (522bp) protein (174aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AP33_9CLOT
SCNpilot_BF_INOC_scaffold_0_71
unknown

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comp(88935..89237)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_0_72
Enterococcus avium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(89336..90613)
DNA (1278bp) protein (426aa)
Diaminopimelate decarboxylase n=1 Tax=Enterococcus avium ATCC 14025 RepID=S0LHE9_ENTAV
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
diaminopimelate decarboxylase
SCNpilot_BF_INOC_scaffold_0_73
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(90765..91700)
DNA (936bp) protein (312aa)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:EYE89047.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EYE89047.1};; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervid
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I1J7_9CLOT
SCNpilot_BF_INOC_scaffold_0_74
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

91860..93191
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P020_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16790.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococ
NOL1/NOP2/sun family putative RNA methylase
SCNpilot_BF_INOC_scaffold_0_75
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

93298..94032
DNA (735bp) protein (245aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pep
rluA; ribosomal small subunit pseudouridine synthase A (EC:4.2.1.70)
Pseudouridine synthase n=1 Tax=Clostridium difficile P29 RepID=T4P402_CLODI
SCNpilot_BF_INOC_scaffold_0_76
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(94112..94612)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:182 RepID=R7QUM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF42262.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp
hypothetical protein
SCNpilot_BF_INOC_scaffold_0_77
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

94739..95581
DNA (843bp) protein (281aa)
GCN5-related N-acetyltransferase n=1 Tax=Caloramator australicus RC3 RepID=I7J4P5_9CLOT
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CCJ32826.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC
SCNpilot_BF_INOC_scaffold_0_78
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

95594..96496
DNA (903bp) protein (301aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
rluC1; ribosomal large subunit pseudouridine synthase C (EC:5.4.99.24)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:505 RepID=R7B7W6_9CLOT
SCNpilot_BF_INOC_scaffold_0_79
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

96513..97337
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLW4_CLOBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ49291.1}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
SCNpilot_BF_INOC_scaffold_0_80
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

97346..98992
DNA (1647bp) protein (549aa)
Phosphoribulokinase/uridine kinase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TU97_ALKMQ
ATPase AAA {ECO:0000313|EMBL:KJF28423.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
phosphoribulokinase/uridine kinase
SCNpilot_BF_INOC_scaffold_0_81
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

99018..100607
DNA (1590bp) protein (530aa)
Stage II sporulation E family protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TM29_ALKMQ
stage II sporulation E family protein
Stage II sporulation E family protein {ECO:0000313|EMBL:ABR47247.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalli
SCNpilot_BF_INOC_scaffold_0_82
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

100679..101239
DNA (561bp) protein (187aa)
Regulatory protein, ArsR n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PXQ3_CLOSD
Regulatory protein, ArsR
Regulatory protein, ArsR {ECO:0000313|EMBL:CBH21218.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandi
SCNpilot_BF_INOC_scaffold_0_83
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

101249..102901
DNA (1653bp) protein (551aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUV6_9CLOT
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA {ECO:0000313|EMBL:EOD00417.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldi
extracellular solute-binding protein
SCNpilot_BF_INOC_scaffold_0_84
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

102898..103908
DNA (1011bp) protein (337aa)
Epoxyqueuosine (OQ) reductase QueG n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CT77_9CLOT
Epoxyqueuosine (OQ) reductase QueG {ECO:0000313|EMBL:EOC99898.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter
hypothetical protein
SCNpilot_BF_INOC_scaffold_0_85
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

103951..105138
DNA (1188bp) protein (396aa)
8-amino-7-oxononanoate synthase {ECO:0000256|SAAS:SAAS00087543}; EC=2.3.1.47 {ECO:0000256|SAAS:SAAS00087543};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; C
pyridoxal phosphate-dependent acyltransferase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CC69_9CLOT
SCNpilot_BF_INOC_scaffold_0_86
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

105408..106319
DNA (912bp) protein (304aa)
Chemotaxis protein cheV (EC:2.7.3.-)
Chemotaxis protein cheV {ECO:0000313|EMBL:CBH21708.1}; EC=2.7.3.- {ECO:0000313|EMBL:CBH21708.1};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclo
Chemotaxis protein cheV n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PS54_CLOSD
SCNpilot_BF_INOC_scaffold_0_87
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

106486..107025
DNA (540bp) protein (180aa)
Transcriptional regulator, MerR family, near polyamine transporter n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CTA6_9CLOT
Transcriptional regulator, MerR family, near polyamine transporter {ECO:0000313|EMBL:EOC99923.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibac
DNA-binding protein
SCNpilot_BF_INOC_scaffold_0_88
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

107041..108081
DNA (1041bp) protein (347aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1443128 species="Bacteria; Firmicutes; Clostridia; Clostr
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7Y4_CLOBO
spermidine/putrescine ABC transporter ATP-binding subunit
SCNpilot_BF_INOC_scaffold_0_89
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

108083..108919
DNA (837bp) protein (279aa)
Spermidine Putrescine ABC transporter permease component PotB n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATG6_9CLOT
Spermidine Putrescine ABC transporter permease component PotB {ECO:0000313|EMBL:EOC99921.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;
binding--dependent transport system inner membrane component family protein
SCNpilot_BF_INOC_scaffold_0_90
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

108913..109686
DNA (774bp) protein (258aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase {ECO:0000313|EMBL:ABW20069.1}; EC=2.1.3.3 {ECO:0000313|EMBL:ABW20069.1};; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clost
Ornithine carbamoyltransferase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJT7_ALKOO
Displaying items 61-90 of 619 in total

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