ggKbase home page

SCNpilot_BF_INOC_scaffold_6

Search features with annotation key words

Displaying items 31-60 of 360 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_6_31
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38345..39214
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003604A45
DnaJ-class molecular chaperone with C-terminal Zn finger domain
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:AFC85567.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; F
SCNpilot_BF_INOC_scaffold_6_32
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39344..39709)
DNA (366bp) protein (122aa)
PilH family regulatory protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W990_9GAMM
PilH family regulatory protein {ECO:0000313|EMBL:EIL96031.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_BF_INOC_scaffold_6_33
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39851..40849)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372BBEB
quinone oxidoreductase
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_BF_INOC_scaffold_6_34
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40971..41846)
DNA (876bp) protein (292aa)
S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000256|RuleBase:RU362030}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362030};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria;
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D2514
methyltransferase
SCNpilot_BF_INOC_scaffold_6_35
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42079..43503)
DNA (1425bp) protein (475aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthom
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
dihydrolipoamide dehydrogenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B37F32
SCNpilot_BF_INOC_scaffold_6_36
unknown

Not on your lists

comp(43594..43974)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_6_37
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43977..45200)
DNA (1224bp) protein (408aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxI
dihydrolipoamide succinyltransferase n=1 Tax=Rudaea cellulosilytica RepID=UPI000365E744
dihydrolipoamide succinyltransferase
SCNpilot_BF_INOC_scaffold_6_38
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45206..48052)
DNA (2847bp) protein (949aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:EIL95107.1}; EC=1.2.4.2 {ECO:0000313|EMBL:EIL95107.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadale
sucA; 2-oxoglutarate dehydrogenase (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6L6_9GAMM
SCNpilot_BF_INOC_scaffold_6_39
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48203..49165)
DNA (963bp) protein (321aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL38099.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghae
GCN5-related N-acetyltransferase id=2882830 bin=GWF1_Xanthomonadales_69_6 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
N-acetyltransferase GCN5
SCNpilot_BF_INOC_scaffold_6_40
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49162..50355)
DNA (1194bp) protein (398aa)
Transcription factor {ECO:0000313|EMBL:KJV33869.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensi
hypothetical protein XsacN4_19968 id=2882827 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas sacchari genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
transcription factor
SCNpilot_BF_INOC_scaffold_6_41
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50461..51828)
DNA (1368bp) protein (456aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZFM9_XANCT
adenylosuccinate lyase
SCNpilot_BF_INOC_scaffold_6_42
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51919..53319
DNA (1401bp) protein (467aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1121014 species="Bacteria; Prot
fumC; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II n=1 Tax=Xanthomonas perforans 91-118 RepID=F0BYY2_9XANT
SCNpilot_BF_INOC_scaffold_6_43
Eimeria mitis, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

Not on your lists

53452..54579
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364E4BA
Uncharacterized protein {ECO:0000313|EMBL:CDJ29531.1}; TaxID=44415 species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeri
hypothetical protein
SCNpilot_BF_INOC_scaffold_6_44
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55134..56105)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000373E0A1
Uncharacterized protein {ECO:0000313|EMBL:KGM54960.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeon
hypothetical protein
SCNpilot_BF_INOC_scaffold_6_45
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56102..56959)
DNA (858bp) protein (286aa)
Multidrug ABC transporter ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WD27_9GAMM
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:EIL97368.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodan
ABC-type multidrug transport system, ATPase component
SCNpilot_BF_INOC_scaffold_6_46
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56956..57330)
DNA (375bp) protein (125aa)
GntR family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000348C3CE
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AIF47794.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella j
SCNpilot_BF_INOC_scaffold_6_47
unknown

Not on your lists

comp(57335..57694)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_6_48
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57885..58439
DNA (555bp) protein (185aa)
vitamin B12 ABC transporter permease n=1 Tax=Xanthomonas sacchari RepID=UPI0002631D47
vitamin B12 ABC transporter permease
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas saccha
SCNpilot_BF_INOC_scaffold_6_49
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58483..60204)
DNA (1722bp) protein (574aa)
adenylylsulfate kinase (EC:2.7.1.25 2.7.7.4) Tax=GWB2_Deltaproteobacteria_55_19_curated
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein (EC:2.7.7.4)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL12 RepID=UPI00035FB9D1
SCNpilot_BF_INOC_scaffold_6_50
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60261..62153)
DNA (1893bp) protein (631aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380CABE
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHK79030.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source=
SCNpilot_BF_INOC_scaffold_6_51
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62355..63098
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E146F
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_BF_INOC_scaffold_6_52
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63221..64561
DNA (1341bp) protein (447aa)
UDP-glucose 6-dehydrogenase n=1 Tax=Rudaea cellulosilytica RepID=UPI000369473F
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KFN44652.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas ory
nucleotide sugar dehydrogenase
SCNpilot_BF_INOC_scaffold_6_53
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64599..65723
DNA (1125bp) protein (375aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=983917 species="Bacter
GDP-mannose 4,6-dehydratase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWV9_RUBGI
SCNpilot_BF_INOC_scaffold_6_54
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65725..65946
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C6325
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX13636.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
SCNpilot_BF_INOC_scaffold_6_55
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65989..66603
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035F1118
Nucleoprotein/polynucleotide-associated enzyme {ECO:0000313|EMBL:EIL95139.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_6_56
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66668..67414)
DNA (747bp) protein (249aa)
3-ketoacyl-ACP reductase (EC:1.1.1.36)
3-ketoacyl-ACP reductase n=1 Tax=Dyella ginsengisoli RepID=UPI0003457E17
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:EIL88489.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter f
SCNpilot_BF_INOC_scaffold_6_57
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67523..68017)
DNA (495bp) protein (165aa)
poly (3-hydroxybutyrate) depolymerase n=1 Tax=Dyella ginsengisoli RepID=UPI000349E3EC
Poly (3-hydroxybutyrate) depolymerase {ECO:0000313|EMBL:KJV32026.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Lute
poly (3-hydroxybutyrate) depolymerase
SCNpilot_BF_INOC_scaffold_6_58
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68210..68950)
DNA (741bp) protein (247aa)
NODE_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96738.1}; EC=1.1.1.36 {ECO:0000313|EMBL:KIQ96738.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
3-ketoacyl-ACP reductase (EC:1.1.1.36)
3-ketoacyl-ACP reductase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E4584
SCNpilot_BF_INOC_scaffold_6_59
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69034..69936)
DNA (903bp) protein (301aa)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037940D4
glutamyl-Q tRNA(Asp) ligase
SCNpilot_BF_INOC_scaffold_6_60
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70089..70949
DNA (861bp) protein (287aa)
Protease HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Heat shock protein HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; TaxID=1379159 species="Bacteria; Proteobacte
heat shock protein HtpX n=1 Tax=Dyella japonica RepID=UPI0002D2BD3F
protease HtpX
Displaying items 31-60 of 360 in total

View Taxonomy