ggKbase home page

SCNpilot_BF_INOC_scaffold_335

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_335_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148..672)
DNA (525bp) protein (175aa)
Phosphoribosyltransferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4D0_ACIDE
Phosphoribosyltransferase {ECO:0000313|EMBL:EER60689.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafield
phosphoribosyltransferase
SCNpilot_BF_INOC_scaffold_335_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(726..2111)
DNA (1386bp) protein (462aa)
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000255|HAMAP-Rule:MF_00011}; Short=AMPSase {ECO:0000255|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000255|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000255|HAMAP-Rule:MF_00
Adenylosuccinate synthetase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=PURA_ACIET
SCNpilot_BF_INOC_scaffold_335_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2149..3297)
DNA (1149bp) protein (383aa)
UPI0003A13687 related cluster n=1 Tax=unknown RepID=UPI0003A13687
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
histidyl-tRNA synthetase 2
SCNpilot_BF_INOC_scaffold_335_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3359..3544)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP68_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91008.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp.
hypothetical protein
SCNpilot_BF_INOC_scaffold_335_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3557..4456)
DNA (900bp) protein (300aa)
Protein HflC n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MFY4_ACIET
hflc protein
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycli
SCNpilot_BF_INOC_scaffold_335_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4466..5530)
DNA (1065bp) protein (355aa)
UPI0003D3D624 related cluster n=1 Tax=unknown RepID=UPI0003D3D624
Membrane protease subunits, stomatin/prohibitin homologs {ECO:0000313|EMBL:GAD24220.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax
hflk protein
SCNpilot_BF_INOC_scaffold_335_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5921..7042)
DNA (1122bp) protein (374aa)
GTP-binding proten HflX n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365BB13
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
GTP-binding proten HflX
SCNpilot_BF_INOC_scaffold_335_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7143..7391)
DNA (249bp) protein (83aa)
RNA-binding protein Hfq n=1 Tax=Curvibacter lanceolatus RepID=UPI00036D6890
RNA chaperone Hfq
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_BF_INOC_scaffold_335_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7481..8824)
DNA (1344bp) protein (448aa)
UPI0003A91DC1 related cluster n=1 Tax=unknown RepID=UPI0003A91DC1
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobact
engA; GTP-binding protein enga
SCNpilot_BF_INOC_scaffold_335_10
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8836..9975)
DNA (1140bp) protein (380aa)
Outer membrane protein assembly factor BamB n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q2Y6_ACIAP
outer membrane assembly lipoprotein YfgL
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; A
SCNpilot_BF_INOC_scaffold_335_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9972..10631)
DNA (660bp) protein (220aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003807CED
Uncharacterized protein {ECO:0000313|EMBL:GAD24225.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
SCNpilot_BF_INOC_scaffold_335_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10647..11936)
DNA (1290bp) protein (430aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
Histidine--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXJ4_ALIDB
SCNpilot_BF_INOC_scaffold_335_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12020..13297)
DNA (1278bp) protein (426aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hyd
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXJ5_ALIDB
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
SCNpilot_BF_INOC_scaffold_335_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13298..14233)
DNA (936bp) protein (312aa)
UPI0003A6C2AD related cluster n=1 Tax=unknown RepID=UPI0003A6C2AD
Uncharacterized protein {ECO:0000313|EMBL:GAD24228.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
SCNpilot_BF_INOC_scaffold_335_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14226..15053)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037C2596
Type IV pilus biogenesis/stability protein PilW {ECO:0000313|EMBL:GAD24229.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sourc
type IV pilus biogenesis/stability protein pilw
SCNpilot_BF_INOC_scaffold_335_16
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15083..16195)
DNA (1113bp) protein (371aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:
Dual-specificity RNA methyltransferase RlmN n=2 Tax=Acidovorax RepID=RLMN_ACISJ
radical SAM protein
SCNpilot_BF_INOC_scaffold_335_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16251..16676)
DNA (426bp) protein (142aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000255|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000255|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000255|HAMAP-Rule:M
Nucleoside diphosphate kinase n=1 Tax=Acidovorax sp. (strain JS42) RepID=NDK_ACISJ
SCNpilot_BF_INOC_scaffold_335_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16754..17983)
DNA (1230bp) protein (410aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
Pseudouridine synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXK0_ALIDB
pseudouridine synthase Rsu
SCNpilot_BF_INOC_scaffold_335_19
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17976..18599)
DNA (624bp) protein (208aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4B1_ACIDE
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
segregation and condensation protein B
SCNpilot_BF_INOC_scaffold_335_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18768..19757)
DNA (990bp) protein (330aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
Pseudouridine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GEK2_ALIDK
pseudouridine synthase
SCNpilot_BF_INOC_scaffold_335_21
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19757..20605)
DNA (849bp) protein (283aa)
Peptidase M23B n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W569_ACISJ
peptidase M23B
Peptidase M23B {ECO:0000313|EMBL:ABM41394.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax s
SCNpilot_BF_INOC_scaffold_335_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20646..21431)
DNA (786bp) protein (262aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:ADV00772.1}; EC=2.1.1.77 {ECO:0000313|EMBL:ADV00772.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
Protein-L-isoaspartate O-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXK4_ALIDB
SCNpilot_BF_INOC_scaffold_335_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21428..22201)
DNA (774bp) protein (258aa)
surE; stationary phase survival protein SurE (EC:3.1.3.6); K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
surE; stationary phase survival protein SurE (EC:3.1.3.6); K03787 5'-nucleotidase [EC:3.1.3.5] id=12552302 bin=BDI species=Delftia acidovorans genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
stationary-phase survival protein SurE
SCNpilot_BF_INOC_scaffold_335_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22331..23311
DNA (981bp) protein (327aa)
NADPH2:quinone reductase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X9B8_DELAC
NADPH2:quinone reductase {ECO:0000313|EMBL:EPD46740.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
alcohol dehydrogenase
SCNpilot_BF_INOC_scaffold_335_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23363..24886
DNA (1524bp) protein (508aa)
diguanylate cyclase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037BF437
Diguanylate cyclase {ECO:0000313|EMBL:GAD24239.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
diguanylate cyclase
SCNpilot_BF_INOC_scaffold_335_26
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25010..25450)
DNA (441bp) protein (147aa)
Putative signal transduction protein with CBS domains n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MC55_ACIET
signal transduction protein with cbs domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ACM33760.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
SCNpilot_BF_INOC_scaffold_335_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25765..26370
DNA (606bp) protein (202aa)
Glutathione S-transferase domain-containing protein id=1279022 bin=GWE1_Burkholderiales_65_30 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
gst; glutathione S-transferase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_BF_INOC_scaffold_335_28
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26444..27682)
DNA (1239bp) protein (413aa)
Arabinose efflux permease family protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EKF9_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJE52766.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovo
transporter
SCNpilot_BF_INOC_scaffold_335_29
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27703..28467)
DNA (765bp) protein (255aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J0K9N3_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJE50310.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF31
IclR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_335_30
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28565..29404
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ED43_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE50311.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
short chain dehydrogenase
Displaying items 1-30 of 86 in total

View Taxonomy