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SCNpilot_BF_INOC_scaffold_1170

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1170_1

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comp(1..114)
DNA (114bp) protein (38aa)
Translation elongation factor Tu (Fragment) n=1 Tax=mine drainage metagenome RepID=T1C3N3_9ZZZZ
Translation elongation factor Tu {ECO:0000313|EMBL:EQD65413.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.
translation elongation factor Tu
SCNpilot_BF_INOC_scaffold_1170_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(204..2294)
DNA (2091bp) protein (697aa)
Translation elongation factor 2 (EF-2/EF-G) n=5 Tax=mine drainage metagenome RepID=T1CGF9_9ZZZZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
fusA; elongation factor G
SCNpilot_BF_INOC_scaffold_1170_3
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2313..2780)
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=3 Tax=Xanthomonas oryzae pv. oryzae RepID=RS7_XANOM
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas ca
SCNpilot_BF_INOC_scaffold_1170_4
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2807..3181)
DNA (375bp) protein (125aa)
30S ribosomal protein S12 id=2468511 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=GWF1_Xanthomonadales_69_6_curated
30S ribosomal protein S12
SCNpilot_BF_INOC_scaffold_1170_5
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3373..7569)
DNA (4197bp) protein (1399aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Rudaea cellulosilytica RepID=UPI0003718CD2
SCNpilot_BF_INOC_scaffold_1170_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7596..11756)
DNA (4161bp) protein (1387aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Rudaea cellulosilytica RepID=UPI000370045F
SCNpilot_BF_INOC_scaffold_1170_7
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11977..12354)
DNA (378bp) protein (126aa)
50S ribosomal protein L7 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6CC02
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimona
50S ribosomal protein L7/L12
SCNpilot_BF_INOC_scaffold_1170_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12405..12929)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036394D4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Ole
50S ribosomal protein L10
SCNpilot_BF_INOC_scaffold_1170_9

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comp(13264..13965)
DNA (702bp) protein (234aa)
50s ribosomal protein l1 n=1 Tax=mine drainage metagenome RepID=T0ZAT5_9ZZZZ
50s ribosomal protein l1 {ECO:0000313|EMBL:EQD42178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L1
SCNpilot_BF_INOC_scaffold_1170_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13969..14397)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVI1_PSEUU
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseu
SCNpilot_BF_INOC_scaffold_1170_11
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14555..15115)
DNA (561bp) protein (187aa)
transcription antitermination protein nusG
Transcription antitermination protein nusG id=2468504 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
SCNpilot_BF_INOC_scaffold_1170_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15123..15512)
DNA (390bp) protein (130aa)
Protein translocase subunit SecE n=2 Tax=Rhodanobacter RepID=I4WGB0_9GAMM
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella ji
SCNpilot_BF_INOC_scaffold_1170_13
GWD2_Bacteroidales_45_23, GWD2_Bacteroidales_45_23, GWD2_Bacteroidales_45_23, GWD2_Bacteroidales_45_23, Bacteroidetes, Bacteria

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comp(15746..15820)
DNA (75bp) protein (25aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein id=1934229 bin=GWD2_Bacteroidales_45_23 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein id=1934229 bin=GWD2_Bacteroidales_45_23 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
tetratricopeptide repeat protein,histidine kinase
Displaying 13 items

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