ggKbase home page

SCNpilot_BF_INOC_scaffold_258

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_258_1
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1186
DNA (1185bp) protein (395aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P7A3_LEIXC
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia x
SCNpilot_BF_INOC_scaffold_258_2
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1227..1853
DNA (627bp) protein (209aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source=
sodA; superoxide dismutase (EC:1.15.1.1)
superoxide dismutase n=1 Tax=Arthrobacter sp. PAO19 RepID=UPI0003B72BB2
SCNpilot_BF_INOC_scaffold_258_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1949..2956
DNA (1008bp) protein (336aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae
gapA; glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Microbacteriaceae RepID=UPI00037D533F
SCNpilot_BF_INOC_scaffold_258_4
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2960..4177
DNA (1218bp) protein (406aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=582680 species="Bacteria;
pgk; phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase n=1 Tax=Agromyces italicus RepID=UPI0003B656C3
SCNpilot_BF_INOC_scaffold_258_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4177..4971
DNA (795bp) protein (265aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
tpiA; hypothetical protein (EC:5.3.1.1)
triosephosphate isomerase n=1 Tax=Agromyces italicus RepID=UPI0003B3F690
SCNpilot_BF_INOC_scaffold_258_6
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5046..5309
DNA (264bp) protein (88aa)
Preprotein translocase, SecG subunit n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RWR0_LEIAQ
preprotein translocase subunit SecG
Strain 70137, complete genome {ECO:0000313|EMBL:AJM77725.1}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
SCNpilot_BF_INOC_scaffold_258_7
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5343..5699
DNA (357bp) protein (119aa)
electron transporter n=1 Tax=Microbacteriaceae RepID=UPI000362E336
electron transport protein
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cyn
SCNpilot_BF_INOC_scaffold_258_8
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5716..6516)
DNA (801bp) protein (267aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31); K01057 6-phosphogluconolactonase [EC:3.1.1.31] id=7722192 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
pgl; 6-phosphogluconolactonase (EC:3.1.1.31)
6-phosphogluconolactonase {ECO:0000313|EMBL:KJC63268.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
SCNpilot_BF_INOC_scaffold_258_9
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6519..7478)
DNA (960bp) protein (320aa)
oxidoreductase n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00037D08A2
oxppcycle protein
Uncharacterized protein {ECO:0000313|EMBL:AGW41347.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 4630
SCNpilot_BF_INOC_scaffold_258_10
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7531..9072)
DNA (1542bp) protein (514aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0
zwfA2; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RCI3_LEIAQ
SCNpilot_BF_INOC_scaffold_258_11
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9076..10674)
DNA (1599bp) protein (533aa)
pgiA; hypothetical protein; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] id=7722195 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00115780}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00115780};; TaxID=1348338 species="Bacteri
glucose-6-phosphate isomerase
SCNpilot_BF_INOC_scaffold_258_12
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10671..11783)
DNA (1113bp) protein (371aa)
tal2; transaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2] id=7722196 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=1358026 species="Bacteria; Actinobac
tal2; transaldolase (EC:2.2.1.2)
SCNpilot_BF_INOC_scaffold_258_13
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11816..14014)
DNA (2199bp) protein (733aa)
tktA1; transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] id=7722197 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leif
transketolase
SCNpilot_BF_INOC_scaffold_258_14
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14162..15169
DNA (1008bp) protein (336aa)
ctaB; protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] id=7722198 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
protoheme IX farnesyltransferase
SCNpilot_BF_INOC_scaffold_258_15
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15166..16137
DNA (972bp) protein (324aa)
cytochrome B561 n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3067D
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:KDS88214.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus
SCNpilot_BF_INOC_scaffold_258_16
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16199..17569
DNA (1371bp) protein (457aa)
hypothetical protein id=7721725 bin=CNBR_ACT species=Micromonospora lupini genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:KJL34750.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_258_17
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17764..19182
DNA (1419bp) protein (473aa)
Fe-S cluster assembly protein SufB n=2 Tax=Bacteria RepID=UPI0003B65D2B
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU03254.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
sufB; iron-regulated ABC-type transporter
SCNpilot_BF_INOC_scaffold_258_18
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19249..20352
DNA (1104bp) protein (368aa)
ABC transporter permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B755D1
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU03189.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
hypothetical protein
SCNpilot_BF_INOC_scaffold_258_19
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20349..20675
DNA (327bp) protein (109aa)
dioxygenase n=1 Tax=Humibacter albus RepID=UPI0003B4511F
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU03188.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
dioxygenase
SCNpilot_BF_INOC_scaffold_258_20
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20690..21448
DNA (759bp) protein (253aa)
iron ABC transporter ATP-binding protein n=1 Tax=Curtobacterium flaccumfaciens RepID=UPI000365FB8C
Cysteine desulfurase {ECO:0000313|EMBL:EYT66776.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;
FeS assembly ATPase SufC
SCNpilot_BF_INOC_scaffold_258_21
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21476..21805
DNA (330bp) protein (110aa)
hypothetical protein id=7722204 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Strain 70137, complete genome {ECO:0000313|EMBL:AJM78420.1}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
SCNpilot_BF_INOC_scaffold_258_22
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21852..22451)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003746DDE
Tetracycline repressor protein class E {ECO:0000313|EMBL:KJL36577.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginseng
tetR; TetR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_258_23
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22509..23138
DNA (630bp) protein (210aa)
biotin biosynthesis protein BioC n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B674C4
Biotin transporter BioY {ECO:0000313|EMBL:KJL36576.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
BioY protein
SCNpilot_BF_INOC_scaffold_258_24
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

23135..23851
DNA (717bp) protein (239aa)
cobalt ABC transporter ATP-binding protein n=2 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B584E0
ABC transporter
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_BF_INOC_scaffold_258_25
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23848..24441
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349090B
Uncharacterized protein {ECO:0000313|EMBL:EYT59041.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
cobalt transport protein
SCNpilot_BF_INOC_scaffold_258_26
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24441..24779
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00035C28B9
Zinc finger CHY domain protein {ECO:0000313|EMBL:EFW92004.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucih
hypothetical protein
SCNpilot_BF_INOC_scaffold_258_27
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24874..26472
DNA (1599bp) protein (533aa)
ybiT; ATPase components of ABC transporters with duplicated ATPase domains id=7722210 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ABC transporter
Contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU03184.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium
SCNpilot_BF_INOC_scaffold_258_28
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26572..26937
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B59C23
Uncharacterized protein {ECO:0000313|EMBL:ERK71792.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCNpilot_BF_INOC_scaffold_258_29
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26954..27799)
DNA (846bp) protein (282aa)
hypothetical protein id=7722212 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Sortase-sorted surface protein {ECO:0000313|EMBL:KDP90084.1}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LM
sortase-sorted surface protein
SCNpilot_BF_INOC_scaffold_258_30
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27796..28029)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJM9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EAR24355.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
Displaying items 1-30 of 171 in total

View Taxonomy