ggKbase home page

SCNpilot_BF_INOC_scaffold_1728

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1728_1
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..457)
DNA (456bp) protein (152aa)
ABC-type multidrug transport system, ATPase and permease component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LWW1_CLOCD
multidrug ABC transporter ATPase and permease
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:AEV69822.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcac
SCNpilot_BF_INOC_scaffold_1728_2
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

comp(454..1122)
DNA (669bp) protein (223aa)
Multidrug resistance ABC transporter ATP-binding and permease protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YCB6_DICT6
multidrug resistance ABC transporter ATP-binding and permease
Multidrug resistance ABC transporter ATP-binding and permease protein {ECO:0000313|EMBL:ACI19835.1}; TaxID=309799 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" sourc
SCNpilot_BF_INOC_scaffold_1728_3
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1420..2187
DNA (768bp) protein (256aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=720554 species="Bacteria; Firmic
prolyl-tRNA synthetase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D8B4
prolyl-tRNA synthetase, family I
SCNpilot_BF_INOC_scaffold_1728_4
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2209..2853
DNA (645bp) protein (215aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1263068 species="Bacteria; Firmi
Proline--tRNA ligase n=2 Tax=Clostridium RepID=A7VYS7_9CLOT
Suspect SCG annotation. See neighboring gene [SCNpilot_BF_INOC_scaffold_1728_3].
proS; prolyl-tRNA synthetase
SCNpilot_BF_INOC_scaffold_1728_5
unknown

Not on your lists

2884..3477
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1728_6
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4965..5981
DNA (1017bp) protein (339aa)
M42 glutamyl aminopeptidase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XX19_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:CDA19693.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Rumin
hypothetical protein
SCNpilot_BF_INOC_scaffold_1728_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5974..7002
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NCB2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC08815.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
SCNpilot_BF_INOC_scaffold_1728_8
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7041..8300
DNA (1260bp) protein (420aa)
Aluminum resistance protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6N162_9CLOT
Aluminum resistance protein {ECO:0000313|EMBL:CDC04770.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostri
ynbB; putative protein YnbB
SCNpilot_BF_INOC_scaffold_1728_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8595..9167)
DNA (573bp) protein (191aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS67_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK95936.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" sourc
SCNpilot_BF_INOC_scaffold_1728_10
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(9181..9858)
DNA (678bp) protein (226aa)
uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] Tax=GWF2_Clostridiales_36_10_curated
Uroporphyrinogen decarboxylase (URO-D) id=4332080 bin=GWF2_Clostridiales_36_10 species=Syntrophobotulus glycolicus genus=Syntrophobotulus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
uroporphyrinogen decarboxylase
SCNpilot_BF_INOC_scaffold_1728_11
unknown

Not on your lists

10192..10302
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1728_12
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10371..10790
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Treponema primitia RepID=UPI0002555823
Uncharacterized protein {ECO:0000313|EMBL:KIE46679.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.
hypothetical protein
SCNpilot_BF_INOC_scaffold_1728_13
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10780..12000
DNA (1221bp) protein (407aa)
Uncharacterized protein n=6 Tax=Clostridium thermocellum RepID=E6UNZ3_CLOTL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN52788.1}; Flags: Precursor;; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridi
SCNpilot_BF_INOC_scaffold_1728_14
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12002..12691
DNA (690bp) protein (230aa)
ABC transporter related protein n=6 Tax=Clostridium thermocellum RepID=A3DFR0_CLOTH
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ABN52789.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermoce
SCNpilot_BF_INOC_scaffold_1728_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12749..13531
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U9M5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ53819.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp.
hypothetical protein
SCNpilot_BF_INOC_scaffold_1728_16
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13533..14510
DNA (978bp) protein (326aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N720_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH06014.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 1
SCNpilot_BF_INOC_scaffold_1728_17
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14507..15622
DNA (1116bp) protein (372aa)
Peptidase T-like protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VRC1_CLOSH
peptidase T-like protein rbh
Peptidase T-like protein {ECO:0000313|EMBL:AGC68951.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium s
SCNpilot_BF_INOC_scaffold_1728_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15619..15978
DNA (360bp) protein (120aa)
Peptidase C39-like family protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0N3G1_9CLOT
Peptidase C39-like family protein {ECO:0000313|EMBL:EJF38927.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1728_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16508..17296
DNA (789bp) protein (263aa)
Cystathionine beta-lyase {ECO:0000313|EMBL:EJF39136.1}; EC=4.4.1.8 {ECO:0000313|EMBL:EJF39136.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;
cystathionine beta-lyase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037E6542
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Displaying 19 items

View Taxonomy