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SCNpilot_BF_INOC_scaffold_1968

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1968_1
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(2..313)
DNA (312bp) protein (104aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:1
VanSG2 n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HRG7_9FIRM
SCNpilot_BF_INOC_scaffold_1968_2
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1209..2183
DNA (975bp) protein (325aa)
Oxidoreductase domain protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6CTP2_PAESJ
oxidoreductase
Oxidoreductase domain protein {ECO:0000313|EMBL:ACT00673.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2
SCNpilot_BF_INOC_scaffold_1968_3
unknown

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comp(2246..2968)
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1968_4
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3067..4056)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SCM8_9BACL
hypothetical protein
Tax=BJP_IG2069_Clostridiales_42_11
SCNpilot_BF_INOC_scaffold_1968_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4046..4531)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum CFSAN002367 RepID=S8BFU6_CLOBO
hypothetical protein
Clostridium botulinum B2 450 B2_450_contig007, whole genome shotgun sequence {ECO:0000313|EMBL:KIS22681.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
SCNpilot_BF_INOC_scaffold_1968_6
Mogibacterium sp. CM50, Mogibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4779..5024)
DNA (246bp) protein (82aa)
TIGR03905 family protein n=1 Tax=Mogibacterium sp. CM50 RepID=J4WEF2_9FIRM
TIGR03905 family protein {ECO:0000313|EMBL:EJU23736.1}; TaxID=936375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis; Mogibacterium.;" source="Mogib
hypothetical protein
SCNpilot_BF_INOC_scaffold_1968_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5058..5480)
DNA (423bp) protein (141aa)
FeS cluster assembly scaffold protein NifU, Clostridium type n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LAC3_RUMC1
Nitrogen fixation protein NifU {ECO:0000313|EMBL:KJF41607.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococ
FeS cluster assembly scaffold protein NifU, Clostridium type
SCNpilot_BF_INOC_scaffold_1968_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5484..6803)
DNA (1320bp) protein (440aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1262769 species="Bacteri
iscS1; Cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6D7_9CLOT
SCNpilot_BF_INOC_scaffold_1968_9
unknown

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comp(6803..6997)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1968_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7153..9558)
DNA (2406bp) protein (802aa)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000366247E
Negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:EJF40494.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostri
ATPase AAA-2 domain-containing protein
SCNpilot_BF_INOC_scaffold_1968_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9598..10614)
DNA (1017bp) protein (339aa)
putative ATP:guanido phosphotransferase TTE2328 (EC:2.7.3.-)
ATP:guanido phosphotransferase C-terminal catalytic domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NFC8_9CLOT
ATP:guanido phosphotransferase C-terminal catalytic domain protein {ECO:0000313|EMBL:CDC09860.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; e
SCNpilot_BF_INOC_scaffold_1968_12
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10607..11110)
DNA (504bp) protein (168aa)
UvrB/UvrC domain protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UEU8_9CLOT
UvrB/UvrC domain protein {ECO:0000313|EMBL:CDC78636.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridiu
Uncharacterized protein with conserved CXXC pairs
SCNpilot_BF_INOC_scaffold_1968_13
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11238..11690)
DNA (453bp) protein (151aa)
Transcriptional repressor, CtsR n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6R6_ETHHY
transcriptional repressor CtsR
Transcriptional repressor, CtsR {ECO:0000313|EMBL:ADU25799.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinen
SCNpilot_BF_INOC_scaffold_1968_14
Prevotella sp. CAG:732, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12140..13987)
DNA (1848bp) protein (616aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:732 RepID=R6XX37_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD20881.1}; TaxID=1262934 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotel
hypothetical protein
SCNpilot_BF_INOC_scaffold_1968_15
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14111..15478)
DNA (1368bp) protein (456aa)
Putative efflux protein, MATE family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LTD1_CLOCD
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:AEV68378.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" sour
SCNpilot_BF_INOC_scaffold_1968_16
unknown

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15673..16023
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1968_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16254..17183
DNA (930bp) protein (310aa)
S1 RNA binding domain protein n=2 Tax=Clostridium RepID=A7VWH3_9CLOT
S1 RNA binding domain protein {ECO:0000313|EMBL:EDO60120.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum D
Ribosomal protein S1
SCNpilot_BF_INOC_scaffold_1968_18
Paenisporosarcina sp. HGH0030, Paenisporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17375..17803)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Paenisporosarcina sp. HGH0030 RepID=S2XI07_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EPD49590.1}; TaxID=1078085 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Paenisporosarcina.;" source="Paenisporosarcina sp. HGH0030.;"
flagellin
Displaying 18 items

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