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SCNpilot_BF_INOC_scaffold_2266

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2266_1
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(2..1552)
DNA (1551bp) protein (517aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BBK8_9FIRM
SCNpilot_BF_INOC_scaffold_2266_2
unknown

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comp(1542..2018)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_3
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2266..3000)
DNA (735bp) protein (245aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysS; Lysyl-tRNA synthetase, class II (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8I5_9CLOT
SCNpilot_BF_INOC_scaffold_2266_4
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3214..3663)
DNA (450bp) protein (150aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysine--tRNA ligase n=2 Tax=Clostridium RepID=A7VST6_9CLOT
lysyl-tRNA synthetase
SCNpilot_BF_INOC_scaffold_2266_5
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3752..4225)
DNA (474bp) protein (158aa)
Transcription elongation factor GreA n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U6K9_ETHHY
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=663278 species="Bacteria
SCNpilot_BF_INOC_scaffold_2266_6
unknown

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comp(4320..5120)
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_7
unknown

Not on your lists

comp(5068..5250)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_8
Paenibacillus sp. P1XP2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5346..6869)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000366B039
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:KHF32823.1}; TaxID=1472719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus
extracellular solute-binding protein
SCNpilot_BF_INOC_scaffold_2266_9
unknown

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comp(6994..8652)
DNA (1659bp) protein (553aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_10
Thermoanaerobacterium saccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8649..9173)
DNA (525bp) protein (175aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VYC2_THESW
RNA polymerase sigma factor, sigma-70 family
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AFK87517.1}; TaxID=1094508 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incer
SCNpilot_BF_INOC_scaffold_2266_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9400..10413
DNA (1014bp) protein (338aa)
Cell shape determining protein, MreB/Mrl family n=2 Tax=Clostridium RepID=A7VRQ0_9CLOT
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EDO61730.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clo
mreB; Rod shape-determining protein MreB
SCNpilot_BF_INOC_scaffold_2266_12
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10462..11340
DNA (879bp) protein (293aa)
Cell shape-determining protein MreC n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGC2_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Rum
rod shape-determining protein MreC
SCNpilot_BF_INOC_scaffold_2266_13
unknown

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comp(11232..11582)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_14
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11934..13826
DNA (1893bp) protein (631aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036F0AD2
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EJF41770.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
penicillin-binding protein transpeptidase
SCNpilot_BF_INOC_scaffold_2266_15
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13889..14632
DNA (744bp) protein (248aa)
Site-determining protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARP7_9CLOT
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritim
septum site-determining protein MinD
SCNpilot_BF_INOC_scaffold_2266_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15010..15414
DNA (405bp) protein (135aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAA
mgsA; Methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNQ4_9FIRM
SCNpilot_BF_INOC_scaffold_2266_17
unknown

Not on your lists

15548..15994
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_2266_18
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

Not on your lists

16392..16790
DNA (399bp) protein (133aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=2 Tax=root RepID=R7BE20_9FIRM
SCNpilot_BF_INOC_scaffold_2266_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16908..18683
DNA (1776bp) protein (592aa)
aspS1; Aspartate-tRNA ligase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PKP6_9CLOT
Aspartate--tRNA ligase 2 {ECO:0000313|EMBL:CDC10347.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridiu
SCNpilot_BF_INOC_scaffold_2266_20
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18908..19549)
DNA (642bp) protein (214aa)
Predicted permeases n=1 Tax=Clostridium sp. CAG:964 RepID=R6UBR8_9CLOT
Predicted permeases {ECO:0000313|EMBL:CDC77546.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp.
Predicted permeases
Displaying 20 items

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