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SCNpilot_BF_INOC_scaffold_2658

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_2658_1
Zhouia amylolytica, Zhouia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1..240)
DNA (240bp) protein (80aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PI98_MURRD
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:ETN95145.1}; TaxID=1286632 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zhouia.;" source="Zhouia amylolytica AD3.;"
short-chain dehydrogenase
SCNpilot_BF_INOC_scaffold_2658_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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389..1096
DNA (708bp) protein (236aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1262803 species="Bacteri
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Clostridium sp. CAG:413 RepID=R6NBE2_9CLOT
purine-nucleoside phosphorylase
SCNpilot_BF_INOC_scaffold_2658_3
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1110..1517
DNA (408bp) protein (136aa)
cytidine deaminase n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B43E1B
cytidine deaminase
Cytidine deaminase {ECO:0000313|EMBL:EOS46535.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
SCNpilot_BF_INOC_scaffold_2658_4
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1514..2836
DNA (1323bp) protein (441aa)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EEX23075.1}; EC=2.4.2.2 {ECO:0000313|EMBL:EEX23075.1};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Bl
pyn; pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCY7_9FIRM
SCNpilot_BF_INOC_scaffold_2658_5
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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comp(2980..4053)
DNA (1074bp) protein (358aa)
2-nitropropane dioxygenase NPD Tax=RBG_13_Caldithrix_44_9_curated
2-nitropropane dioxygenase NPD id=7201523 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
2-nitropropane dioxygenase-like enzyme
SCNpilot_BF_INOC_scaffold_2658_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4390..4710)
DNA (321bp) protein (107aa)
UPF0145 protein CLO_1218 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5URJ1_CLOBO
UPF0145 protein CLO_1218 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str.
hypothetical protein
SCNpilot_BF_INOC_scaffold_2658_7
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4732..5391)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZGR9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ15036.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
SCNpilot_BF_INOC_scaffold_2658_8
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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5542..6459
DNA (918bp) protein (306aa)
Transcriptional regulator, PadR family n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9GFJ6_9BACL
Transcriptional regulator, PadR family {ECO:0000313|EMBL:GAE08762.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM
putative transcriptional regulator
SCNpilot_BF_INOC_scaffold_2658_9
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6506..7222)
DNA (717bp) protein (239aa)
Putative uncharacterized protein id=2807746 bin=GWC2_Clostridiales_40_7 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
dioxygenase
Tax=BJP_IG2069_Clostridiales_42_11
SCNpilot_BF_INOC_scaffold_2658_10
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9836..12355)
DNA (2520bp) protein (840aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9G6_9FIRM
alpha-2-macroglobulin
Tax=BJP_IG2069_Clostridiales_42_11
SCNpilot_BF_INOC_scaffold_2658_11
Lysinibacillus odysseyi, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12352..12852)
DNA (501bp) protein (167aa)
RNA polymerase n=1 Tax=Oceanobacillus sp. Ndiop RepID=UPI00028977EB
RNA polymerase {ECO:0000313|EMBL:KGR81859.1}; TaxID=1220589 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus odysseyi 34hs-1 = NBRC 100172.;"
RNA polymerase subunit sigma-24
SCNpilot_BF_INOC_scaffold_2658_12
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13078..13887
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KGA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34463.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
xylose isomerase domain protein TIM barrel
SCNpilot_BF_INOC_scaffold_2658_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14439..14984)
DNA (546bp) protein (182aa)
FAD dependent oxidoreductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0X8_VARPE
fad dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADU37924.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parado
SCNpilot_BF_INOC_scaffold_2658_14
unknown

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15423..15929
DNA (507bp) protein (169aa)

This feature has no annotations

Displaying 14 items

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