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SCNpilot_BF_INOC_scaffold_3217

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_3217_1
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1117)
DNA (1116bp) protein (372aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9S5_9CLOT
SCNpilot_BF_INOC_scaffold_3217_2
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1555..2319
DNA (765bp) protein (255aa)
proB; glutamate 5-kinase ProB (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|H
Glutamate 5-kinase n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YNZ4_9FIRM
SCNpilot_BF_INOC_scaffold_3217_3
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2355..3548
DNA (1194bp) protein (398aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogena
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E3E1_9FIRM
SCNpilot_BF_INOC_scaffold_3217_4
unknown

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3932..4291
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3217_5
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4354..5043
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IBB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42716.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococ
hypothetical protein
SCNpilot_BF_INOC_scaffold_3217_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5162..6406)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000367ED31
YbbR-like protein {ECO:0000313|EMBL:EJF38468.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_3217_7
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6403..7287)
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U8Q5_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23857.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3217_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7345..8484)
DNA (1140bp) protein (380aa)
Cysteine desulfurase family protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E128_9FIRM
Cysteine desulfurase family protein {ECO:0000313|EMBL:CCX81936.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" sourc
cysteine desulfurase family protein
SCNpilot_BF_INOC_scaffold_3217_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8481..8711)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0MVY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF38489.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
SCNpilot_BF_INOC_scaffold_3217_10
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8789..9256)
DNA (468bp) protein (156aa)
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NWS1_9FIRM
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {E
SCNpilot_BF_INOC_scaffold_3217_11
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9327..10079)
DNA (753bp) protein (251aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N4X2_9FIRM
SCNpilot_BF_INOC_scaffold_3217_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10385..11026)
DNA (642bp) protein (214aa)
NlpC/P60 family protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8A8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ24109.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
SCNpilot_BF_INOC_scaffold_3217_13
unknown

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comp(11460..12872)
DNA (1413bp) protein (471aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3217_14
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(12865..13407)
DNA (543bp) protein (181aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EUU2_9FIRM
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CCX92357.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
rpoE; RNA polymerase sigma-24 subunit
SCNpilot_BF_INOC_scaffold_3217_15
unknown

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comp(14788..15207)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_3217_16
Oxytricha trifallax, Oxytricha, Sporadotrichida, Stichotrichia, Eukaryota

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comp(16381..16623)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Oxytricha trifallax RepID=J9HKN0_9SPIT
Uncharacterized protein {ECO:0000313|EMBL:EJY65597.1}; TaxID=1172189 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrich
SCNpilot_BF_INOC_scaffold_3217_17
Oxytricha trifallax, Oxytricha, Sporadotrichida, Stichotrichia, Eukaryota

Not on your lists

comp(16781..17251)
DNA (471bp) protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:EJY66653.1}; TaxID=1172189 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea; Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrich
Displaying 17 items

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