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SCNpilot_bf_inoc_scaffold_338_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_338_curated_1
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(217..2364)
DNA (2148bp) protein (716aa)
HRDC domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T239_PALPW
hrdc domain protein
HRDC domain protein {ECO:0000313|EMBL:ADQ78783.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_338_curated_2
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2479..3711)
DNA (1233bp) protein (411aa)
glutaconyl-CoA decarboxylase subunit beta n=1 Tax=Anaerophaga thermohalophila RepID=UPI0003612608
glutaconyl-CoA decarboxylase subunit beta
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_338_curated_3
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3723..4172)
DNA (450bp) protein (150aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1F7_PALPW
biotin/lipoyl attachment domaiN-containing protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_338_curated_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4175..4534)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Thermophagus xiamenensis RepID=UPI000255CEDD
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_338_curated_5
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4547..6106)
DNA (1560bp) protein (520aa)
carboxyl transferase (EC:6.4.1.3)
Carboxyl transferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1F9_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_338_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6134..6541)
DNA (408bp) protein (136aa)
methylmalonyL-CoA epimerase (EC:5.1.99.1); K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
Methylmalonyl-CoA epimerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1G0_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_338_curated_7
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(6889..8781)
DNA (1893bp) protein (631aa)
hypothetical protein MsalJ2_14073 id=3951577 bin=GWC2_Bacteroidetes_46_850 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_338_curated_8
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(8835..9383)
DNA (549bp) protein (183aa)
MerR family transcriptional regulator id=3951579 bin=GWC2_Bacteroidetes_46_850 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
MerR family transcriptional regulator
Tax=GWB2_Bacteroidetes_41_8_curated
SCNpilot_bf_inoc_scaffold_338_curated_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(9578..10642)
DNA (1065bp) protein (355aa)
NAD-dependent epimerase/dehydratase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
NAD-dependent epimerase/dehydratase family protein id=1951166 bin=GWE2_RBX1_39_32 species=unknown genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Tax=GWF2_RBX1_38_17_curated
SCNpilot_bf_inoc_scaffold_338_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10658..12004)
DNA (1347bp) protein (449aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ADQ79123.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ADQ79123.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Nucleotide sugar dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T329_PALPW
SCNpilot_bf_inoc_scaffold_338_curated_11
Bacteroides clarus CAG:160, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12022..13152)
DNA (1131bp) protein (377aa)
aminotransferase DegT n=1 Tax=Bacteroides gallinarum RepID=UPI000369F782
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:CDB81641.1}; TaxID=1263039 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides clarus CAG:160.;"
aminotransferase DegT
SCNpilot_bf_inoc_scaffold_338_curated_12
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13229..13792)
DNA (564bp) protein (188aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Bacteroides RepID=B0NP59_BACSE
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EDS15860.1}; TaxID=449673 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris ATCC 43183.;"
Acetyltransferase
SCNpilot_bf_inoc_scaffold_338_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(13966..15513)
DNA (1548bp) protein (516aa)
glycyL-tRNA synthetase (EC:6.1.1.14); K01880 glycyl-tRNA synthetase [EC:6.1.1.14]
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Glycine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5C0_PALPW
SCNpilot_bf_inoc_scaffold_338_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15660..18404
DNA (2745bp) protein (915aa)
DNA topoisomerase iv subunit a (EC:5.99.1.3); K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase IV subunit A {ECO:0000313|EMBL:ADQ79915.1}; EC=5.99.1.3 {ECO:0000313|EMBL:ADQ79915.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA topoisomerase IV subunit A n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5C1_PALPW
SCNpilot_bf_inoc_scaffold_338_curated_15
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18413..22447)
DNA (4035bp) protein (1345aa)
Two-component system sensor histidine kinase/response regulator hybrid n=1 Tax=Bacteroides sp. 3_1_23 RepID=D7JXA2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:AHW61499.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
putative two-component system sensor kinase/response regulator fusion protein
SCNpilot_bf_inoc_scaffold_338_curated_16
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22833..24161
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I5D8_CLOCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL76674.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
SCNpilot_bf_inoc_scaffold_338_curated_17
Bacteroides sp. 4_1_36, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24467..27094
DNA (2628bp) protein (876aa)
Arylsulfatase n=2 Tax=Bacteroides RepID=A7V641_BACUN
Sulfatase {ECO:0000313|EMBL:EFV25818.1}; TaxID=457393 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_1_36.;"
N-sulfoglucosamine sulfohydrolase
SCNpilot_bf_inoc_scaffold_338_curated_18
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27212..28231
DNA (1020bp) protein (340aa)
endo-1,4-beta-xylanase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000369D64B
1,4-beta-xylanase {ECO:0000313|EMBL:KJF45243.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
glycoside hydrolase family protein
SCNpilot_bf_inoc_scaffold_338_curated_19
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28266..29366
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Bacteroides salyersiae CL02T12C01 RepID=I9TA24_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY65668.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C01.;"
beta-xylosidase
SCNpilot_bf_inoc_scaffold_338_curated_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29567..30760)
DNA (1194bp) protein (398aa)
aminotransferase class i and ii (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1]
Aminotransferase class I and II {ECO:0000313|EMBL:ADQ80735.1}; EC=2.6.1.1 {ECO:0000313|EMBL:ADQ80735.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aminotransferase class I and II n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7P1_PALPW
SCNpilot_bf_inoc_scaffold_338_curated_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30932..32164)
DNA (1233bp) protein (411aa)
glutamate-5-semialdehyde dehydrogenase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Gamma-glutamyl phosphate reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T548_PALPW
SCNpilot_bf_inoc_scaffold_338_curated_22
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32290..33366)
DNA (1077bp) protein (359aa)
glutamate 5-kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11]
Glutamate 5-kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T549_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_338_curated_23
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33353..34330)
DNA (978bp) protein (326aa)
Peptidase M28 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T550_PALPW
peptidase m28
Peptidase M28 {ECO:0000313|EMBL:ADQ79844.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_338_curated_24
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

34807..34998
DNA (192bp) protein (64aa)
HEPN domain protein id=5037735 bin=GWA2_Ignavibacteria-rel_35_8 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
HEPN domain-containing protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_bf_inoc_scaffold_338_curated_25
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

35171..35473
DNA (303bp) protein (101aa)
Nucleotidyltransferase domain-containing protein id=4605781 bin=GWF2_Bacteroidetes_43_63 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
nucleotidyltransferase
Tax=CG_Bacteroid_01
SCNpilot_bf_inoc_scaffold_338_curated_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35798..36670
DNA (873bp) protein (291aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T551_PALPW
electron transfer flavoprotein alpha/beta-subunit; K03521 electron transfer flavoprotein beta subunit
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:ADQ79845.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_338_curated_27
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36675..37694
DNA (1020bp) protein (340aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T552_PALPW
electron transfer flavoprotein alpha subunit; K03522 electron transfer flavoprotein alpha subunit
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ADQ79846.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_338_curated_28
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

37726..38010
DNA (285bp) protein (95aa)
ORF6N domain n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BN71_9FIRM
ORF6N domain {ECO:0000313|EMBL:CDD66588.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
kila-n, DNA-binding domain
SCNpilot_bf_inoc_scaffold_338_curated_29
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38096..39805
DNA (1710bp) protein (570aa)
acyL-CoA dehydrogenase domaiN-containing protein; K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T553_PALPW
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADQ79847.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_338_curated_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39895..40818)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5N3_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80027.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 1-30 of 46 in total

View Taxonomy