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SCNpilot_bf_inoc_scaffold_163_curated

Search features with annotation key words

Displaying items 61-90 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_163_curated_61
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(74062..74730)
DNA (669bp) protein (223aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5Z001_9PORP
hypothetical protein; K06973
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_163_curated_62
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(74817..76046)
DNA (1230bp) protein (410aa)
s-adenosylmethionine/tRNA-ribosyltransferase isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4Q2_PALPW
SCNpilot_bf_inoc_scaffold_163_curated_63
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

76091..77170
DNA (1080bp) protein (360aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4P7_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79691.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_163_curated_64
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

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77187..78110
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) RepID=H9UH51_SPIAZ
hypothetical protein
Tax=GWB1_Spirochaetes_48_6_curated
SCNpilot_bf_inoc_scaffold_163_curated_65
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

78159..79085
DNA (927bp) protein (309aa)
Site-specific DNA methylase; K06223 DNA adenine methylase [EC:2.1.1.72]
modification methylase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237B90A
Modification methylase {ECO:0000313|EMBL:KGN74348.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
SCNpilot_bf_inoc_scaffold_163_curated_66
Neisseria bacilliformis, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79123..79656
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Neisseria bacilliformis ATCC BAA-1200 RepID=F2BDP2_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EGF10448.1}; TaxID=888742 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria bacilliformis ATCC BAA-1200.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_163_curated_67
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

79672..80553
DNA (882bp) protein (294aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
DNA methylase N-4 n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237B906
DNA methylase N-4/N-6 domain-containing protein
SCNpilot_bf_inoc_scaffold_163_curated_68
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(80679..81899)
DNA (1221bp) protein (407aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T876_PALPW
SCNpilot_bf_inoc_scaffold_163_curated_69
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(81923..83089)
DNA (1167bp) protein (389aa)
iroN-containing alcohol dehydrogenase; K00100 [EC:1.1.1.-]
Iron-containing alcohol dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T877_PALPW
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ADQ80921.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_163_curated_70
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(83076..85085)
DNA (2010bp) protein (670aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WZV8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK03653.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein rbh
SCNpilot_bf_inoc_scaffold_163_curated_71
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(85116..86357)
DNA (1242bp) protein (414aa)
GTP-binding protein hflx (EC:3.1.5.-); K03665 GTP-binding protein HflX
GTPase HflX n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T879_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_163_curated_72
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(86414..87094)
DNA (681bp) protein (227aa)
TonB family domain-containing protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5Z7D5_9PORP
outer membrane protein TonB; K03832 periplasmic protein TonB
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_163_curated_73
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

87370..88404
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T880_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80924.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_163_curated_74
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

88414..89103
DNA (690bp) protein (230aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Cytidylate kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T881_PALPW
SCNpilot_bf_inoc_scaffold_163_curated_75
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

89157..90011
DNA (855bp) protein (285aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T882_PALPW
SCNpilot_bf_inoc_scaffold_163_curated_76
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

90030..91013
DNA (984bp) protein (328aa)
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11]
6-phosphofructokinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T883_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_163_curated_77
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

91277..92032
DNA (756bp) protein (252aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase id=3592067 bin=GWC2_Bacteroidetes_46_850 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_163_curated_78
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

92118..93488
DNA (1371bp) protein (457aa)
DNA repair protein radA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3V7_PALPW
DNA replication and repair protein rada; K04485 DNA repair protein RadA/Sms
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_163_curated_79
unknown

Not on your lists

comp(93597..93806)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_163_curated_80
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

93914..95677
DNA (1764bp) protein (588aa)
amp-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8J3_PALPW
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADQ81037.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_163_curated_81
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

95710..96465
DNA (756bp) protein (252aa)
tRNA pseudouridine synthase a; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
tRNA pseudouridine synthase A n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8J2_PALPW
SCNpilot_bf_inoc_scaffold_163_curated_82
unknown

Not on your lists

comp(96570..97586)
DNA (1017bp) protein (339aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_163_curated_83
unknown

Not on your lists

comp(97922..98440)
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_163_curated_84
Odoribacter splanchnicus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(98462..100927)
DNA (2466bp) protein (822aa)
Uncharacterized protein n=1 Tax=Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6) RepID=F9ZB64_ODOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY34399.1}; Flags: Precursor;; TaxID=709991 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter.;" source="Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 /; NCTC 10825 / 1651/6) (Bacteroides splanchnicus).;"
SCNpilot_bf_inoc_scaffold_163_curated_85
unknown

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comp(101501..102172)
DNA (672bp) protein (224aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_163_curated_86
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(102322..104754)
DNA (2433bp) protein (811aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:189 RepID=R5JI54_9BACE
Uncharacterized protein {ECO:0000313|EMBL:AHF12619.1}; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_163_curated_87
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


105366..105623
DNA (258bp) protein (86aa)
50S ribosomal protein L31 type B n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8J0_PALPW
LSU ribosomal protein l31p; K02909 large subunit ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_163_curated_88
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(105699..107510)
DNA (1812bp) protein (604aa)
M6 family metalloprotease domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2Z9_PALPW
m6 family metalloprotease domain protein
M6 family metalloprotease domain protein {ECO:0000313|EMBL:ADQ79093.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_163_curated_89
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(107612..108694)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Flavobacterium sp. SCGC AAA160-P02 RepID=UPI00036A65C9
group 1 glycosyl transferase
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_163_curated_90
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(108687..110015)
DNA (1329bp) protein (443aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3P3_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79337.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 61-90 of 111 in total

View Taxonomy