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SCNpilot_bf_inoc_scaffold_529_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_529_curated_1
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

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314..913
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K2R1_DEHLB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_bf_inoc_scaffold_529_curated_2
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1105..1584
DNA (480bp) protein (160aa)
hypothetical protein AnHS1_02098 id=4945107 bin=GWA2_Bacteroidetes_42_15 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
positive regulator of sigma(E), RseC/MucC
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_3
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1613..2485
DNA (873bp) protein (291aa)
ferredoxin n=1 Tax=Anaerophaga thermohalophila RepID=UPI000319234F
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2672..4003
DNA (1332bp) protein (444aa)
Electron transport complex, RnfABCDGE type, C subunit n=3 Tax=Bacteroidales RepID=D0TAL0_9BACE
electron transport complex protein RnfC; K03615 electron transport complex protein RnfC
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4014..4982
DNA (969bp) protein (323aa)
Electron transport complex, RnfABCDGE type, D subunit n=3 Tax=Parabacteroides merdae RepID=A7AKV3_9PORP
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
electron transport complex protein RnfD; K03614 electron transport complex protein RnfD
SCNpilot_bf_inoc_scaffold_529_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5030..5659
DNA (630bp) protein (210aa)
Electron transport complex rnfabcdge type G subunit n=1 Tax=Tannerella sp. CAG:51 RepID=R7DG39_9PORP
electron transport complex, RnfABCDGE type, G subunit; K03612 electron transport complex protein RnfG
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5664..6263
DNA (600bp) protein (200aa)
SoxR-reducing system protein RsxE n=1 Tax=Bacteroides sp. CAG:462 RepID=R7CXG8_9BACE
rnfE; electron transport complex protein RsxE; K03613 electron transport complex protein RnfE
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6403..6978
DNA (576bp) protein (192aa)
Electron transport complex, rnfabcdge type, A subunit n=2 Tax=Bacteroides RepID=I9S003_9BACE
Na+-transporting NADH:ubiquinone oxidoreductase electron transport complex protein RnfA; K03617 electron transport complex protein RnfA rbh
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_9
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7095..10289
DNA (3195bp) protein (1065aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
glutamine-dependent carbamyl phosphate synthetase; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
carbamoyl phosphate synthase large subunit n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035D074B
SCNpilot_bf_inoc_scaffold_529_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10308..12098
DNA (1791bp) protein (597aa)
arginyL-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Arginine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7D0_PALPW
SCNpilot_bf_inoc_scaffold_529_curated_11
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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comp(12152..12520)
DNA (369bp) protein (123aa)
Putative uncharacterized protein id=3602293 bin=GWF2_Lentisphaerae_49_21 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_bf_inoc_scaffold_529_curated_12
Odoribacter sp. CAG:788, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12530..13171)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Odoribacter sp. CAG:788 RepID=R5PKM5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCZ09487.1}; TaxID=1262909 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter sp. CAG:788.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_529_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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13532..14953
DNA (1422bp) protein (474aa)
Lytic transglycosylase catalytic n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Q3_PALPW
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADQ79347.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_529_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14950..15465
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T339_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79133.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_529_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16160..17704
DNA (1545bp) protein (515aa)
carboxyl transferase (EC:6.4.1.3)
Carboxyl transferase {ECO:0000313|EMBL:ADQ79132.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ADQ79132.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Carboxyl transferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T338_PALPW
SCNpilot_bf_inoc_scaffold_529_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17754..18089
DNA (336bp) protein (112aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T337_PALPW
biotin/lipoyl attachment domaiN-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:ADQ79131.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_529_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18255..19385
DNA (1131bp) protein (377aa)
Periplasmic binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3C5_PALPW
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ADQ79219.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_529_curated_18
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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19389..20126
DNA (738bp) protein (246aa)
Putative uncharacterized protein id=2021908 bin=GWD2_Bacteroidales_45_23 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
lipoyltransferase and lipoate-protein ligase
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_529_curated_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20233..21819)
DNA (1587bp) protein (529aa)
ribonuclease, rne/rng family; K08301 ribonuclease G [EC:3.1.26.-]
Ribonuclease, Rne/Rng family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T139_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_529_curated_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22027..22302)
DNA (276bp) protein (92aa)
Histone family protein DNA-binding protein id=4090887 bin=GWF2_Bacteroidetes_33_16 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ADQ78419.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_529_curated_21
unknown

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comp(22498..22614)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_529_curated_22
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22659..23717
DNA (1059bp) protein (353aa)
Hemolysin A n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2Y1_PALPW
hemolysin a
Hemolysin A {ECO:0000313|EMBL:ADQ79075.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_529_curated_23
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(23752..27858)
DNA (4107bp) protein (1369aa)
Putative uncharacterized protein n=1 Tax=Bacteroides ovatus 3_8_47FAA RepID=F7LBP9_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EGN03073.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
Signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_529_curated_24
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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28049..30331
DNA (2283bp) protein (761aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYK8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK01643.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
alpha-1,2-mannosidase rbh
SCNpilot_bf_inoc_scaffold_529_curated_25
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30394..34002
DNA (3609bp) protein (1203aa)
glycosylhydrolase; K01191 alpha-mannosidase [EC:3.2.1.24]
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XNI5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD25223.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
SCNpilot_bf_inoc_scaffold_529_curated_26
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34145..35326
DNA (1182bp) protein (394aa)
Glycosyl hydrolase family 76 n=6 Tax=Bacteroides RepID=C3Q9H2_9BACE
Putative alpha-1,6-mannanase {ECO:0000313|EMBL:CDM07766.1}; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
alpha-1,6-mannanase rbh
SCNpilot_bf_inoc_scaffold_529_curated_27
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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35357..36865
DNA (1509bp) protein (503aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WWS3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK06425.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_529_curated_28
Prevotella buccalis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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36932..37471
DNA (540bp) protein (180aa)
Carbohydrate binding module (Family 6) n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8M9_9BACT
Carbohydrate binding module (Family 6) {ECO:0000313|EMBL:EFA91079.1}; TaxID=679190 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella buccalis ATCC 35310.;"
Displaying 28 items

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