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SCNpilot_bf_inoc_scaffold_528_curated

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_528_curated_1
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(192..1451)
DNA (1260bp) protein (420aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Bacteroides sp. 2_2_4 RepID=C3QNP8_9BACE
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_2
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1470..1973)
DNA (504bp) protein (168aa)
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E1_PALPW
SCNpilot_bf_inoc_scaffold_528_curated_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1995..2372)
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E2_PALPW
glycine cleavage system h protein; K02437 glycine cleavage system H protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2384..3493)
DNA (1110bp) protein (370aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E3_PALPW
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ADQ80987.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3513..4397)
DNA (885bp) protein (295aa)
Rhomboid family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E4_PALPW
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:ADQ80988.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4412..5209)
DNA (798bp) protein (266aa)
Rhomboid family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E5_PALPW
rhomboid family protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_7
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

Not on your lists

5409..5681
DNA (273bp) protein (91aa)
Bacterial nucleoid protein Hbs n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E6_PALPW
bacterial nucleoid protein hbs; K03530 DNA-binding protein HU-beta
Bacterial nucleoid protein Hbs {ECO:0000313|EMBL:KKS67410.1}; TaxID=1618928 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_6.;"
SCNpilot_bf_inoc_scaffold_528_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5947..6339
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2B6L2_9PORP
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6348..7466
DNA (1119bp) protein (373aa)
methylmalonyL-CoA mutase metallochaperone meab; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
Methylmalonyl-CoA mutase metallochaperone MeaB n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T167_PALPW
Methylmalonyl-CoA mutase metallochaperone MeaB {ECO:0000313|EMBL:ADQ78448.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7435..7977)
DNA (543bp) protein (181aa)
DJ-1 family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E7_PALPW
dj-1 family protein; K03152 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis
DJ-1 family protein {ECO:0000313|EMBL:ADQ80991.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_11
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7979..8680)
DNA (702bp) protein (234aa)
TonB family C-domain protein n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JD13_9BACT
tonb family protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_12
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8703..9119)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:144 RepID=R5Y8X1_9BACE
tansport-like protein; K03559 biopolymer transport protein ExbD
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9186..9878)
DNA (693bp) protein (231aa)
Biopolymer transporter ExbB n=2 Tax=Porphyromonadaceae RepID=U5CA15_9PORP
biopolymer transport protein ExbB; K03561 biopolymer transport protein ExbB
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9892..10608)
DNA (717bp) protein (239aa)
pyridoxine 5'-phosphate synthase (EC:2.6.99.2); K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2]
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Pyridoxine 5'-phosphate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E9_PALPW
SCNpilot_bf_inoc_scaffold_528_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10712..11584
DNA (873bp) protein (291aa)
ATP-nad/acox kinase; K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F0_PALPW
SCNpilot_bf_inoc_scaffold_528_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11585..12415
DNA (831bp) protein (277aa)
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Glutamate racemase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7X7_PALPW
SCNpilot_bf_inoc_scaffold_528_curated_17
unknown

Not on your lists

12393..12572
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_528_curated_18
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

13642..14991
DNA (1350bp) protein (450aa)
Por secretion system C-terminal sorting domain containing protein id=2152640 bin=GWE2_Bacteroidetes_42_42 species=Chryseobacterium sp. CF314 genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=GWF2_Bacteroidetes_43_63_curated
SCNpilot_bf_inoc_scaffold_528_curated_19
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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15039..15293
DNA (255bp) protein (85aa)
LamG-like jellyroll fold id=2664528 bin=GWF2_Bacteroidetes_38_335 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Tax=GWA2_Bacteroidetes_31_9_curated
SCNpilot_bf_inoc_scaffold_528_curated_20
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(15308..16531)
DNA (1224bp) protein (408aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SAG0_PEDSD
AraC type helix-turn-helix-domain-containing protein
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ADY52580.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_bf_inoc_scaffold_528_curated_21
unknown

Not on your lists

comp(17224..17397)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_528_curated_22
Coprobacter sp. 177, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17804..20614)
DNA (2811bp) protein (937aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5IRC4_9PORP
4Fe-4S ferredoxin {ECO:0000313|EMBL:KHM47315.1}; TaxID=1572646 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter sp. 177.;"
FAD-binding oxidoreductase
SCNpilot_bf_inoc_scaffold_528_curated_23
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20878..21936)
DNA (1059bp) protein (353aa)
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
Alkaline phosphatase {ECO:0000313|EMBL:KJF42450.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
alkaline phosphatase id=2843163 bin=GWA2_Bacteroidetes_42_15 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_528_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21964..22281)
DNA (318bp) protein (106aa)
Transcriptional regulator n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4F0_PALPW
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ADQ79594.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_25
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22291..23559)
DNA (1269bp) protein (423aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4F1_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_26
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23566..24267)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:462 RepID=R7D0F1_9BACE
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_528_curated_27
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24280..25158)
DNA (879bp) protein (293aa)
Chromosome segregation DNA-binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4F3_PALPW
chromosome segregation DNA-binding protein; K03497 chromosome partitioning protein, ParB family
Chromosome segregation DNA-binding protein {ECO:0000313|EMBL:ADQ79597.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25182..25955)
DNA (774bp) protein (258aa)
Chromosome segregation ATPase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4F4_PALPW
chromosome segregation ATPase; K03496 chromosome partitioning protein
Chromosome segregation ATPase {ECO:0000313|EMBL:ADQ79598.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_29
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26088..27782
DNA (1695bp) protein (565aa)
Gliding-associated putative ABC transporter substrate-binding component GldG n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4F5_PALPW
gliding-associated ABC transporter substrate-binding component gldg
Gliding-associated putative ABC transporter substrate-binding component GldG {ECO:0000313|EMBL:ADQ79599.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_528_curated_30
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(27804..28556)
DNA (753bp) protein (251aa)
Transposase IS200 like family protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QKS2_9CYAN
Transposase IS200 like family protein {ECO:0000313|EMBL:ERT08559.1}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
hypothetical protein
Displaying items 1-30 of 60 in total

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