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SCNpilot_bf_inoc_scaffold_1039_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1039_curated_1
unknown

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comp(1..90)
DNA (90bp) protein (30aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003628BF6
SCNpilot_bf_inoc_scaffold_1039_curated_2
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(161..727)
DNA (567bp) protein (189aa)
RNA polymerase sigma-70 factor, expansion family 1 id=4172026 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_3
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(927..1331)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J3E5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ57158.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1039_curated_4
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(1369..1563)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00036355AA
hypothetical protein
YcfA family protein {ECO:0000313|EMBL:AFZ45297.1}; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="Halothece sp. (strain PCC 7418) (Synechococcus sp. (strain PCC 7418)).;"
SCNpilot_bf_inoc_scaffold_1039_curated_5
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1998..3119
DNA (1122bp) protein (374aa)
Uncharacterized protein {ECO:0000313|EMBL:CEA15897.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
hypothetical protein BACCOPRO_03816, partial id=2626019 bin=GWF2_Bacteroidetes_41_9 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
hypothetical protein
SCNpilot_bf_inoc_scaffold_1039_curated_6
unknown

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3581..3757
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1039_curated_7
unknown

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3783..4829
DNA (1047bp) protein (349aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1039_curated_8
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4846..5394)
DNA (549bp) protein (183aa)
NADPH-dependent FMN reductase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SDQ1_PEDSD
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADY50778.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_bf_inoc_scaffold_1039_curated_9
unknown

Not on your lists

comp(5712..5870)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1039_curated_10

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comp(5964..6404)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003804232
Cytosine/adenosine deaminase {ECO:0000313|EMBL:EJX04325.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
Cytosine/adenosine deaminases
SCNpilot_bf_inoc_scaffold_1039_curated_11
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(6408..6692)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036FEC8C
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_12
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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6768..7130
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036B9F01
hypothetical protein; K07460 putative endonuclease
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_13
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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7161..7523
DNA (363bp) protein (121aa)
Uncharacterized protein id=4595746 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_14
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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7507..8256
DNA (750bp) protein (250aa)
biotin-(acetyl-CoA carboxylase) synthetase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037C7FD4
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_15
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8414..9121
DNA (708bp) protein (236aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase id=4595749 bin=GWC2_Bacteroidetes_46_850 species=Parabacteroides merdae genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_1039_curated_16
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9176..9733
DNA (558bp) protein (186aa)
Ribosome-recycling factor id=4595750 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
ribosome recycling factor; K02838 ribosome recycling factor
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_17
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9734..10663
DNA (930bp) protein (310aa)
ribosome biogenesis GTPase RsgA; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA id=4595751 bin=GWC2_Bacteroidetes_46_850 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_18
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10753..12171
DNA (1419bp) protein (473aa)
cardiolipin synthetase; K06131 cardiolipin synthase [EC:2.7.8.-] rbh
Putative uncharacterized protein id=4595752 bin=GWC2_Bacteroidetes_46_850 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_19
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12190..12726
DNA (537bp) protein (179aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase id=4595753 bin=GWC2_Bacteroidetes_46_850 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
SCNpilot_bf_inoc_scaffold_1039_curated_20
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12723..13931
DNA (1209bp) protein (403aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036CB536
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_21
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13945..14433)
DNA (489bp) protein (163aa)
Phosphohistidine phosphatase SixA id=4756122 bin=GWC2_Bacteroidetes_46_850 species=Indibacter alkaliphilus genus=Indibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Uncharacterized protein {ECO:0000313|EMBL:CEA15725.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
phosphohistidine phosphatase SixA
SCNpilot_bf_inoc_scaffold_1039_curated_22
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14548..14811)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PIQ1_MURRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM71796.1}; TaxID=886377 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1).;"
SCNpilot_bf_inoc_scaffold_1039_curated_23
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14903..16240)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000376B252
MATE efflux family protein {ECO:0000313|EMBL:CEA15130.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
MatE family transmembrane protein
SCNpilot_bf_inoc_scaffold_1039_curated_24
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16544..17035)
DNA (492bp) protein (164aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase id=1885322 bin=GWD2_Bacteroidales_45_23 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_25
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17041..17742)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000378EFFE
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_26
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17926..18495
DNA (570bp) protein (190aa)
Putative uncharacterized protein id=1885315 bin=GWD2_Bacteroidales_45_23 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_1039_curated_27
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


18713..18952
DNA (240bp) protein (80aa)
50S ribosomal protein L28 n=2 Tax=Dysgonomonas RepID=F8WY83_9PORP
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
SCNpilot_bf_inoc_scaffold_1039_curated_28
Porphyromonas sp. COT-290 OH860, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18972..19160
DNA (189bp) protein (63aa)
50S ribosomal protein L33 n=1 Tax=Porphyromonas sp. oral taxon 279 str. F0450 RepID=J6GRQ9_9PORP
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1515615 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. COT-290 OH860.;"
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
SCNpilot_bf_inoc_scaffold_1039_curated_29
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19173..19334
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003637507
Uncharacterized protein {ECO:0000313|EMBL:CEA15136.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1039_curated_30
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19477..20430
DNA (954bp) protein (318aa)
Signal recognition particle-docking protein FtsY id=1885304 bin=GWD2_Bacteroidales_45_23 species=Barnesiella intestinihominis genus=Barnesiella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
ftsY; recognition particle-docking protein; K03110 fused signal recognition particle receptor
Tax=GWC2_Bacteroidetes_46_850_curated
Displaying items 1-30 of 49 in total

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