ggKbase home page

SCNpilot_bf_inoc_scaffold_219_curated

Search features with annotation key words

Displaying items 1-30 of 262 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_219_curated_1
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..2423)
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000381D1A0
glycoside hydrolase
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_bf_inoc_scaffold_219_curated_2
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2528..5344)
DNA (2817bp) protein (939aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000362D7D5
Uncharacterized protein {ECO:0000313|EMBL:EOS13252.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SCNpilot_bf_inoc_scaffold_219_curated_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5384..7195)
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037B406F
Uncharacterized protein {ECO:0000313|EMBL:CDD12104.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_4
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7213..9354)
DNA (2142bp) protein (714aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036062D1
Uncharacterized protein {ECO:0000313|EMBL:EIY17655.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein rbh
SCNpilot_bf_inoc_scaffold_219_curated_5
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9377..12229)
DNA (2853bp) protein (951aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036D355D
Uncharacterized protein {ECO:0000313|EMBL:EKN17105.1}; TaxID=999418 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_6
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12252..14375)
DNA (2124bp) protein (708aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037BCB22
Uncharacterized protein {ECO:0000313|EMBL:EES68964.2}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_6.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14419..15867)
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000375ABBD
Uncharacterized protein {ECO:0000313|EMBL:EDY22021.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15973..18255)
DNA (2283bp) protein (761aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037D1CEC
SusD family protein {ECO:0000313|EMBL:CDD12111.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
SusD family.
SCNpilot_bf_inoc_scaffold_219_curated_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18267..21338)
DNA (3072bp) protein (1024aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035FA842
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD12113.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Outer membrane receptor proteins, mostly Fe transport
SCNpilot_bf_inoc_scaffold_219_curated_10
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21359..23182)
DNA (1824bp) protein (608aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037B4090
Uncharacterized protein {ECO:0000313|EMBL:EOS13247.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SusD family.
SCNpilot_bf_inoc_scaffold_219_curated_11
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23206..26331)
DNA (3126bp) protein (1042aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000368C97B
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:KKB45212.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
Outer membrane cobalamin receptor protein
SCNpilot_bf_inoc_scaffold_219_curated_12
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27192..28436)
DNA (1245bp) protein (415aa)
Hemopexin repeat protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FTM9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CEA15042.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_13
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28481..30874)
DNA (2394bp) protein (798aa)
nahA3; beta-N-acetylhexosaminidase (EC:3.2.1.52); K12373 hexosaminidase [EC:3.2.1.52]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000365B1BD
Uncharacterized protein {ECO:0000313|EMBL:EIZ01420.1}; TaxID=997881 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL05T12C13.;"
SCNpilot_bf_inoc_scaffold_219_curated_14
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30886..32655)
DNA (1770bp) protein (590aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F4ED6
Alpha-L-rhamnosidase {ECO:0000313|EMBL:CEA16344.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
alpha-L-rhamnosidase
SCNpilot_bf_inoc_scaffold_219_curated_15
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32760..35039)
DNA (2280bp) protein (760aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003722A37
alpha-L-rhamnosidase
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_219_curated_16
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35052..35960)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003696B37
transcriptional regulator
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_219_curated_17
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36166..37194)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003617B37
rhamnose-proton symporter; K02856 L-rhamnose-H+ transport protein
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_219_curated_18
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37198..38463)
DNA (1266bp) protein (422aa)
rhaA; L-rhamnose isomerase; K01813 L-rhamnose isomerase [EC:5.3.1.14]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037EF946
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_219_curated_19
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38579..40063)
DNA (1485bp) protein (495aa)
rhamnulose kinase/L-fuculose kinase; K00848 rhamnulokinase [EC:2.7.1.5]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036719A3
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_bf_inoc_scaffold_219_curated_20

Not on your lists

40336..40539
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N7Q0_9BACT
Marine sediment metagenome DNA, contig: S12H4_L06963 {ECO:0000313|EMBL:GAI74545.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_21
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40539..40802
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037D534A
hypothetical protein
Tax=GWA2_Bacteroidetes_31_9_curated
SCNpilot_bf_inoc_scaffold_219_curated_22
Alistipes sp. CAG:514, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

41314..42297
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000373D739
Transcriptional regulator LacI family {ECO:0000313|EMBL:CCX51455.1}; TaxID=1262696 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:514.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_bf_inoc_scaffold_219_curated_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

42522..45638
DNA (3117bp) protein (1039aa)
TonB-dependent receptor n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029AF3EB
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACT92590.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_bf_inoc_scaffold_219_curated_24
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

45643..47658
DNA (2016bp) protein (672aa)
glycan metabolism protein RagB n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029AF4CC
RagB/SusD domain-containing protein
Tax=RBG_13_Bacteroidetes_42_15_curated
SCNpilot_bf_inoc_scaffold_219_curated_25
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

47676..48875
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000362E80C
Uncharacterized protein {ECO:0000313|EMBL:KIC94448.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_26
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

48960..50732
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B7005D
hypothetical protein
Tax=CG_Arma_01
SCNpilot_bf_inoc_scaffold_219_curated_27
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

50755..52815
DNA (2061bp) protein (687aa)
glycoside hydrolase; K01192 beta-mannosidase [EC:3.2.1.25]
Uncharacterized protein id=4389500 bin=GWF2_Lentisphaerae_49_21 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_bf_inoc_scaffold_219_curated_28
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

52899..54263
DNA (1365bp) protein (455aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC82104.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
SCNpilot_bf_inoc_scaffold_219_curated_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54452..55522
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Escherichia sp. TW11588 RepID=UPI0002BBC421
Uncharacterized protein {ECO:0000313|EMBL:EYD82625.1}; TaxID=1444161 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-176-05_S3_C2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_219_curated_30
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

55529..58651
DNA (3123bp) protein (1041aa)
glycosyl hydrolase (EC:3.2.1.24); K01191 alpha-mannosidase [EC:3.2.1.24]
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B5D7F2
Tax=RBG_13_Bacteroidetes_42_15_curated
Displaying items 1-30 of 262 in total

View Taxonomy