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SCNpilot_bf_inoc_scaffold_600_curated_32

Organism: scnpilot_dereplicated_Bacteroidia_2

near complete RP 52 / 55 MC: 5 BSCG 50 / 51 MC: 5 ASCG 12 / 38 MC: 4
Location: 41606..42196

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JYJ5_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 37.9
  • Coverage: 198.0
  • Bit_score: 136
  • Evalue 2.20e-29
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:KKB50016.1}; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.8
  • Coverage: 185.0
  • Bit_score: 189
  • Evalue 4.10e-45
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 38.4
  • Coverage: 190.0
  • Bit_score: 126
  • Evalue 1.20e-26

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Taxonomy

Parabacteroides sp. HGS0025 → Parabacteroides → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 591
ATGAATTTGGATGAAGAAATACTTGAAGAGATTAAGAAGGATAACATAGGAGTTTTTAACCGACTCTTTGAAGATACCTATTATCAATTATATTTTCAATGCAGAAAGATGATTGCTGATCCGGATACAGCAAAAGATTTGCTGCAAAATGTCTATCTGCGTTTCTGGGAAAAACGCATGGATATTGATATCCGCGTATCTTTATCTGCATACTTGTCCCGATCTGTTAGGAATGAATGTCTAAATTATATAAGAGGACAAAGGGATATGGTAAGCCTGCCCGACTCTGCGGATGAGTCTTGGGGTGTTGTAGAACCTGCACAAAATGAGAATGATTCTCCTGAGGCTTGCCTTGAGTTTTTTGAACTTGAAAACCGCATTTCAGAGGTTGTTGAACAGCTTCCTGAACAATGCAGGAATATCTTTAAGCTAAGCCGCGAAAGCGGATTAAAAAATCAAGAGATCGCCGATAAATTAAATTTATCTGTCCGCACCGTTGAAACCCAACTGTACAGGGCGCTTAAAAATATTAAAAACCATCTATATGAGTATTTACAGTTTCTTTTTTGGTTGCTATTCCTTCAAAAGTAA
PROTEIN sequence
Length: 197
MNLDEEILEEIKKDNIGVFNRLFEDTYYQLYFQCRKMIADPDTAKDLLQNVYLRFWEKRMDIDIRVSLSAYLSRSVRNECLNYIRGQRDMVSLPDSADESWGVVEPAQNENDSPEACLEFFELENRISEVVEQLPEQCRNIFKLSRESGLKNQEIADKLNLSVRTVETQLYRALKNIKNHLYEYLQFLFWLLFLQK*