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SCNpilot_bf_inoc_scaffold_1246_curated

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1246_curated_1
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(268..1080)
DNA (813bp) protein (271aa)
uracil-DNA glycosylase (EC:3.2.2.-); K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002DF7059
SCNpilot_bf_inoc_scaffold_1246_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1138..1941)
DNA (804bp) protein (268aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Indole-3-glycerol phosphate synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGG6_9BURK
indole-3-glycerol phosphate synthase-like
SCNpilot_bf_inoc_scaffold_1246_curated_3
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1934..2077)
DNA (144bp) protein (48aa)
Uncharacterized protein (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9L8_ACIDE
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1246_curated_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2091..3125)
DNA (1035bp) protein (345aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18]
Anthranilate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000255|HAMAP-Rule:MF_00211};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Anthranilate phosphoribosyltransferase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=TRPD_POLSJ rbh
SCNpilot_bf_inoc_scaffold_1246_curated_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3168..3848)
DNA (681bp) protein (227aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJQ0_ACIAC
lysine exporter protein LysE/YggA
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ABM31188.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_1246_curated_6
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3869..4447)
DNA (579bp) protein (193aa)
Anthranilate synthase subunit II {ECO:0000313|EMBL:EXU79949.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EXU79949.1};; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
glutamine amidotransferase of anthranilate; K01658 anthranilate synthase component II [EC:4.1.3.27]
Glutamine amidotransferase of anthranilate n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVX6_COMT2
SCNpilot_bf_inoc_scaffold_1246_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4530..4973)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I7_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34850.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_bf_inoc_scaffold_1246_curated_8
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4970..6469)
DNA (1500bp) protein (500aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27]
Anthranilate synthase component I {ECO:0000313|EMBL:ACM31840.1}; EC=4.1.3.27 {ECO:0000313|EMBL:ACM31840.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Anthranilate synthase component I n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBS0_ACIET
SCNpilot_bf_inoc_scaffold_1246_curated_9

Not on your lists

6823..7407
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DLK8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98942.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative lipoprotein transmembrane
SCNpilot_bf_inoc_scaffold_1246_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7480..8190)
DNA (711bp) protein (237aa)
phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2N0_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1246_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8311..8991)
DNA (681bp) protein (227aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ribulose-phosphate 3-epimerase n=1 Tax=Brachymonas chironomi RepID=UPI000369D851
SCNpilot_bf_inoc_scaffold_1246_curated_12
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9025..9420
DNA (396bp) protein (132aa)
magnesium transporter ApaG n=1 Tax=Acidovorax avenae RepID=UPI0002E6EA0D
apaG; ApaG protein; K06195 ApaG protein
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_1246_curated_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9440..11476
DNA (2037bp) protein (679aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00035D02BE
site-specific recombinase Gcr
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1246_curated_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11587..12855
DNA (1269bp) protein (423aa)
Kef-type K+ transport system, membrane component n=1 Tax=Acidovorax sp. CF316 RepID=J0KJX7_9BURK
sodium/hydrogen exchanger
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1246_curated_15
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14081..14830
DNA (750bp) protein (250aa)
peptidase C26; K07010 putative glutamine amidotransferase id=5079749 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
peptidase C26; K07010 putative glutamine amidotransferase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1246_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14849..15880
DNA (1032bp) protein (344aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Thiamine-monophosphate kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVC0_ALIDB
SCNpilot_bf_inoc_scaffold_1246_curated_17
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15894..16991
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KKG4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJA11600.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1246_curated_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16952..17464
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2Q0_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL21158.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1246_curated_19

Not on your lists

comp(17721..18401)
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6L107_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:BAH90426.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09921 hypothetical protein
SCNpilot_bf_inoc_scaffold_1246_curated_20

Not on your lists

18533..19078
DNA (546bp) protein (182aa)
Carboxymuconolactone decarboxylase n=1 Tax=uncultured bacterium RepID=C6L105_9BACT
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:BAH90424.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
carboxymuconolactone decarboxylase
SCNpilot_bf_inoc_scaffold_1246_curated_21

Not on your lists

comp(19148..20209)
DNA (1062bp) protein (354aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ruvB; holliday junction DNA helicase ruvb; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=uncultured bacterium RepID=C6L104_9BACT
SCNpilot_bf_inoc_scaffold_1246_curated_22
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20287..20736)
DNA (450bp) protein (150aa)
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJK3_POLNA
SCNpilot_bf_inoc_scaffold_1246_curated_23
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20930..21589)
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y8E0_LEPCP
two component LuxR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_bf_inoc_scaffold_1246_curated_24
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21709..24063)
DNA (2355bp) protein (785aa)
Putative sensor histidine kinase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT49_TISMK
yxjM; putative sensor histidine kinase
Putative sensor histidine kinase {ECO:0000313|EMBL:AFK55937.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_bf_inoc_scaffold_1246_curated_25

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24089..25048
DNA (960bp) protein (320aa)
Phosphate starvation-inducible protein PhoH n=1 Tax=uncultured bacterium RepID=C6L102_9BACT
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:BAH90421.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phoh family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_bf_inoc_scaffold_1246_curated_26

Not on your lists

25107..25574
DNA (468bp) protein (156aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Endoribonuclease YbeY n=1 Tax=uncultured bacterium RepID=C6L101_9BACT
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_bf_inoc_scaffold_1246_curated_27
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25687..27087)
DNA (1401bp) protein (467aa)
hypothetical protein; K05591 ATP-independent RNA helicase DbpA [EC:3.6.4.13]
Hypothetical conserved protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J8E1_COMT2
DEAD/DEAH box helicase {ECO:0000313|EMBL:KGH26635.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_bf_inoc_scaffold_1246_curated_28
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27124..27567)
DNA (444bp) protein (148aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-]
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Variovorax paradoxus RepID=UPI0003811B13
SCNpilot_bf_inoc_scaffold_1246_curated_29

Not on your lists

comp(27572..28519)
DNA (948bp) protein (316aa)
Cation efflux protein n=1 Tax=uncultured bacterium RepID=C6KUM6_9BACT
Cation efflux protein {ECO:0000313|EMBL:BAH89674.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cation diffusion facilitator family transporter
SCNpilot_bf_inoc_scaffold_1246_curated_30

Not on your lists

comp(28596..29828)
DNA (1233bp) protein (411aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=uncultured bacterium RepID=C6KUL7_9BACT
Displaying items 1-30 of 36 in total

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