ggKbase home page

SCNpilot_bf_inoc_scaffold_858_curated

Search features with annotation key words

Displaying items 61-90 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_858_curated_61
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64137..64532)
DNA (396bp) protein (132aa)
Putative transmembrane protein id=1270361 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_858_curated_62
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64529..64918)
DNA (390bp) protein (130aa)
phosphoribosyL-ATP diphosphatase; K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
phosphoribosyl-ATP pyrophosphatase n=1 Tax=Variovorax paradoxus RepID=UPI00036E9D1D
SCNpilot_bf_inoc_scaffold_858_curated_63
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64924..65313)
DNA (390bp) protein (130aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8X6_ACIDE
SCNpilot_bf_inoc_scaffold_858_curated_64
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65449..66330)
DNA (882bp) protein (294aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Acidovorax sp. CF316 RepID=J1ELV0_9BURK
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_bf_inoc_scaffold_858_curated_65
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67043..67291)
DNA (249bp) protein (83aa)
DNA-binding protein Fis n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12EF9_POLSJ
DNA-binding protein Fis; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein
DNA-binding protein Fis {ECO:0000313|EMBL:ABE43083.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_858_curated_66
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67296..68327)
DNA (1032bp) protein (344aa)
dusB; tRNA-dihydrouridine synthase B; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-]
tRNA-dihydrouridine synthase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZI2_RAMTT
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_858_curated_67
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68620..69096
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZI3_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94540.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_858_curated_68
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69169..69822
DNA (654bp) protein (218aa)
Alkylated DNA repair protein n=37 Tax=Bordetella RepID=F4L9Y0_BORPC
alkB; alkylated DNA repair protein
Alkylated DNA repair protein {ECO:0000313|EMBL:CCN25216.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_bf_inoc_scaffold_858_curated_69
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69845..70702
DNA (858bp) protein (286aa)
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
DNA-O6-methylguanine--protein-cysteine S-methyltransferase {ECO:0000313|EMBL:ABL72303.1}; EC=2.1.1.63 {ECO:0000313|EMBL:ABL72303.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
DNA-O6-methylguanine--protein-cysteine S-methyltransferase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B9V9_PARDP
SCNpilot_bf_inoc_scaffold_858_curated_70
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70771..71661)
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003796714
LysR family transcriptional regulator {ECO:0000313|EMBL:KJA12383.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
LysR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_858_curated_71
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71777..73294
DNA (1518bp) protein (506aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRS4_ALIDB
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:GAO22998.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_858_curated_72
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73521..74684
DNA (1164bp) protein (388aa)
butyryl-CoA dehydrogenase (EC:1.3.99.2); K00257 [EC:1.3.99.-]
Acyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. CF316 RepID=J1EHC1_9BURK
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EJE51691.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_bf_inoc_scaffold_858_curated_73
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74699..75835
DNA (1137bp) protein (379aa)
enoyl-CoA hydratase/isomerase (EC:4.2.1.17)
Probable enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:CAL92684.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAL92684.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Probable enoyl-CoA hydratase/isomerase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1H9_AZOSB
SCNpilot_bf_inoc_scaffold_858_curated_74
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75889..76797
DNA (909bp) protein (303aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) PF6_PSEUP">RepID=G7UPF6_PSEUP
3-hydroxyisobutyrate dehydrogenase
SCNpilot_bf_inoc_scaffold_858_curated_75
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77021..78070
DNA (1050bp) protein (350aa)
peptidase u32; K08303 putative protease [EC:3.4.-.-]
protease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D9EF4
Peptidase {ECO:0000313|EMBL:GAO24433.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_858_curated_76
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78305..79204
DNA (900bp) protein (300aa)
peptidase U32; K01423 [EC:3.4.-.-]
protease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003692F1A
Protease {ECO:0000313|EMBL:GAD24313.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_858_curated_77
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79225..79737
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAS0_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM43345.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_858_curated_78
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79734..80126
DNA (393bp) protein (131aa)
hypothetical protein id=12553484 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:GAD24315.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
dgc domain protein
SCNpilot_bf_inoc_scaffold_858_curated_79
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80119..80703
DNA (585bp) protein (195aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000364B76E
SCNpilot_bf_inoc_scaffold_858_curated_80
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80759..82243
DNA (1485bp) protein (495aa)
ubid family decarboxylase; K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
UbiD family decarboxylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TYF9_ALIDB
UbiD family decarboxylase {ECO:0000313|EMBL:ADV00857.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_858_curated_81
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82277..83497
DNA (1221bp) protein (407aa)
AcnD-accessory protein PrpF n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MAT5_ACIET
acnd-accessory protein prpf; K09788 hypothetical protein
AcnD-accessory protein PrpF {ECO:0000313|EMBL:ACM33536.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_858_curated_82
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83635..84612
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X527_COMTE
UPF0065 protein in tcbD-tcbE intergenic region-like
MFS transporter {ECO:0000313|EMBL:KGH25156.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_bf_inoc_scaffold_858_curated_83
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84619..85479
DNA (861bp) protein (287aa)
carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Curvibacter lanceolatus RepID=UPI000375ADCE
putative isocitrate lyase-family protein,putative carboxyvinyl-carboxyphosphonate phosphorylmutase
Carboxyvinyl-carboxyphosphonate phosphorylmutase {ECO:0000313|EMBL:AIB13495.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCNpilot_bf_inoc_scaffold_858_curated_84
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85693..86115)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WWH0_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD43736.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_858_curated_85
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86237..87328
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035F6711
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34732.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_858_curated_86
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87394..91263)
DNA (3870bp) protein (1290aa)
FAD linked oxidase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4D1_ACISJ
FAD linked oxidase domain-containing protein
FAD linked oxidase domain protein {ECO:0000313|EMBL:ABM41106.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_858_curated_87
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91512..92819
DNA (1308bp) protein (436aa)
glycerol-3-phosphate ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000374B67A
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) {ECO:0000313|EMBL:CDS53792.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
extracellular solute-binding protein
SCNpilot_bf_inoc_scaffold_858_curated_88
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92981..93862
DNA (882bp) protein (294aa)
glycerol-3-phosphate transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000378F947
binding-protein-dependent transport system inner membrane protein; K05814 sn-glycerol 3-phosphate transport system permease protein
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:ABM34200.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_858_curated_89
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94040..94888
DNA (849bp) protein (283aa)
glycerol-3-phosphate transporter membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000377D72D
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EER59792.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
binding-protein-dependent transport systems inner membrane component; K05815 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_bf_inoc_scaffold_858_curated_90
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94948..95970
DNA (1023bp) protein (341aa)
glycerol-3-phosphate-transporting ATPase (EC:3.6.3.20); K05816 sn-glycerol 3-phosphate transport system ATP-binding protein [EC:3.6.3.20]
Glycerol-3-phosphate-transporting ATPase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QCI8_ACIAP
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 61-90 of 108 in total

View Taxonomy