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SCNpilot_bf_inoc_scaffold_858_curated

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Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_858_curated_1
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(598..1254)
DNA (657bp) protein (219aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Aspartokinase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TPL2_ACIAC
SCNpilot_bf_inoc_scaffold_858_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1887..2867)
DNA (981bp) protein (327aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00054821};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
tRNA(ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B2E9C
SCNpilot_bf_inoc_scaffold_858_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3331..5547)
DNA (2217bp) protein (739aa)
GTP pyrophosphokinase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000369A206
(P)ppGpp synthetase I SpoT/RelA {ECO:0000313|EMBL:GAD24860.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
(p)ppGpp synthetase I SpoT/RelA
SCNpilot_bf_inoc_scaffold_858_curated_4
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5544..6470)
DNA (927bp) protein (309aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Polaromonas sp. CF318 RepID=J2U4K2_9BURK
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL86027.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_858_curated_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6639..7382)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E1_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59942.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_858_curated_6
unknown

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comp(7454..7780)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_858_curated_7
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7945..8676
DNA (732bp) protein (244aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Variovorax RepID=E6UV13_VARPE
winged helix family two component transcriptional regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_858_curated_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8682..10190
DNA (1509bp) protein (503aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
integral membrane sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Histidine kinase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E3_ACIDE
SCNpilot_bf_inoc_scaffold_858_curated_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10265..10774)
DNA (510bp) protein (170aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain AT
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Acidovorax avenae RepID=UPI0003170F39
SCNpilot_bf_inoc_scaffold_858_curated_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10771..11472)
DNA (702bp) protein (234aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=1266330 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_858_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11588..13225)
DNA (1638bp) protein (546aa)
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYP7_VARPS
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:ACS19006.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_858_curated_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14048..17530
DNA (3483bp) protein (1161aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Transcription-repair-coupling factor n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAK7_ACISJ
SCNpilot_bf_inoc_scaffold_858_curated_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17545..18174
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI00023754F7
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_858_curated_14
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18240..18980
DNA (741bp) protein (247aa)
phosphoserine phosphatase n=1 Tax=Variovorax paradoxus RepID=UPI00036414FF
serB; putative phosphoserine phosphatase SerB
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_858_curated_15
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19068..20123
DNA (1056bp) protein (352aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWM1_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB35022.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_bf_inoc_scaffold_858_curated_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20223..21311)
DNA (1089bp) protein (363aa)
tryptophan synthase subunit beta; K06001 tryptophan synthase beta chain [EC:4.2.1.20]
tryptophan synthase subunit beta n=1 Tax=Brachymonas chironomi RepID=UPI00037F2E79
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_858_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21480..22214
DNA (735bp) protein (245aa)
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen n=1 Tax=Thauera phenylacetica B4P RepID=N6ZSS2_9RHOO
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_858_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22276..23727)
DNA (1452bp) protein (484aa)
exodeoxyribonuclease I (EC:3.1.11.1); K01141 exodeoxyribonuclease I [EC:3.1.11.1]
Exodeoxyribonuclease I n=2 Tax=Alicycliphilus denitrificans RepID=E8TZY7_ALIDB
ExodeoxyribonucleaseIprotein {ECO:0000313|EMBL:GAO23518.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_858_curated_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23816..24772
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Eudoraea adriatica RepID=UPI00037126C6
Uncharacterized protein {ECO:0000313|EMBL:GAO44708.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
NAD dependent epimerase/dehydratase family protein
SCNpilot_bf_inoc_scaffold_858_curated_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24834..27167)
DNA (2334bp) protein (778aa)
ATP-dependent Clp protease, ATP-binding subunit clpA n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T197_ACIDE
ATP-dependent Clp protease, ATP-binding subunit clpA {ECO:0000313|EMBL:EER61744.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
ATP-dependent clp protease, ATP-binding subunit clpa; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_bf_inoc_scaffold_858_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27261..27491)
DNA (231bp) protein (77aa)
ATP-dependent Clp protease ClpS n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00036D3D83
clpS; ATP-dependent Clp protease adaptor protein ClpS
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_858_curated_22
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27763..28035
DNA (273bp) protein (91aa)
Candidate cold shock-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZB0_RAMTT
cspD; cold shock; K03704 cold shock protein (beta-ribbon, CspA family)
Candidate cold shock-like protein {ECO:0000313|EMBL:AEG93280.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_858_curated_23
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28115..29368)
DNA (1254bp) protein (418aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
icdA; isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42] id=5081716 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
NADP-dependent isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
SCNpilot_bf_inoc_scaffold_858_curated_24
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29576..30055
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RPI4_COMTE
Putative uncharacterized protein {ECO:0000313|EMBL:EHN65729.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
hypothetical protein; K09005 hypothetical protein
SCNpilot_bf_inoc_scaffold_858_curated_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30225..32462)
DNA (2238bp) protein (746aa)
isocitrate dehydrogenase (EC:1.1.1.42)
isocitrate dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036A856C
Isocitrate dehydrogenase {ECO:0000313|EMBL:GAD21965.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_bf_inoc_scaffold_858_curated_26
Acinetobacter sp. NIPH 2036, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(32630..33475)
DNA (846bp) protein (282aa)
DASS family divalent anion:Na+ symporter n=1 Tax=Acinetobacter sp. NIPH 2036 RepID=S3TD20_9GAMM
DASS family divalent anion:Na+ symporter {ECO:0000313|EMBL:EPG37589.1}; TaxID=1217696 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. NIPH 2036.;"
anion transporter; K03319 divalent anion:Na+ symporter, DASS family
SCNpilot_bf_inoc_scaffold_858_curated_27
unknown

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33706..34116
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Aggregatibacter actinomycetemcomitans serotype d str. I63B RepID=G4A064_AGGAC
SCNpilot_bf_inoc_scaffold_858_curated_28
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(34330..34911)
DNA (582bp) protein (194aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
sodB2; superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFL5_9BURK
SCNpilot_bf_inoc_scaffold_858_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35014..36318)
DNA (1305bp) protein (435aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Exodeoxyribonuclease 7 large subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TSM0_ALIDB
SCNpilot_bf_inoc_scaffold_858_curated_30
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36603..37352
DNA (750bp) protein (250aa)
Candidate biopolymer transport protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZS5_RAMTT
tolQ; biopolymer transport protein; K03561 biopolymer transport protein ExbB
Candidate biopolymer transport protein {ECO:0000313|EMBL:AEG93286.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Displaying items 1-30 of 108 in total

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