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SCNpilot_bf_inoc_scaffold_1626_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1626_curated_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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140..469
DNA (330bp) protein (110aa)
ferredoxin n=1 Tax=Brachymonas chironomi RepID=UPI00036F73EF
4Fe-4S ferredoxin; K05524 ferredoxin
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1626_curated_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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562..1644
DNA (1083bp) protein (361aa)
disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D5BE2
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_bf_inoc_scaffold_1626_curated_3
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1749..2507
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TR47_ACIAC
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM33435.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_1626_curated_4
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2637..2972
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI000380B3A6
Competence protein TfoX {ECO:0000313|EMBL:EYT55212.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
TfoX domain-containing protein
SCNpilot_bf_inoc_scaffold_1626_curated_5
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3398..5227
DNA (1830bp) protein (610aa)
gamma-glutamyltransferase n=1 Tax=Acidovorax radicis RepID=UPI000237832A
gamma-glutamyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_1626_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5412..5999
DNA (588bp) protein (196aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Twin-arginine translocation pathway signal n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK62_9BURK
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:EIK89602.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_1626_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6048..8492
DNA (2445bp) protein (815aa)
fdnG; formate dehydrogenase-O, major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK61_9BURK
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EIK89601.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_1626_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8496..9404
DNA (909bp) protein (303aa)
Formate dehydrogenase, iron-sulfur subunit {ECO:0000313|EMBL:EIK89600.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EIK89600.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Formate dehydrogenase, iron-sulfur subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK60_9BURK
formate dehydrogenase subunit beta; K00124 formate dehydrogenase, beta subunit
SCNpilot_bf_inoc_scaffold_1626_curated_9
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9401..10033
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036A0FC0
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:EKU79725.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
formate dehydrogenase subunit gamma
SCNpilot_bf_inoc_scaffold_1626_curated_10
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10099..11106
DNA (1008bp) protein (336aa)
Protein FdhE homolog n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D520_9BURK
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
fdhE; formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_bf_inoc_scaffold_1626_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11106..12614
DNA (1509bp) protein (503aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
selenocysteine synthase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036A788F
SCNpilot_bf_inoc_scaffold_1626_curated_12
unknown

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comp(12759..13037)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1626_curated_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13142..14080
DNA (939bp) protein (313aa)
NAD(FAD)-dependent dehydrogenase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTW8_9BURK
NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:EHR69290.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_bf_inoc_scaffold_1626_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14105..16006
DNA (1902bp) protein (634aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK55_9BURK
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EIK89595.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
SCNpilot_bf_inoc_scaffold_1626_curated_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16161..16640)
DNA (480bp) protein (160aa)
CreA family protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MD82_ACIET
crea family protein; K05805 CreA protein
CreA family protein {ECO:0000313|EMBL:ACM32114.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_1626_curated_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16738..17199
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00037604C0
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
glycine cleavage system H protein
SCNpilot_bf_inoc_scaffold_1626_curated_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17196..17591
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK53_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89593.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_1626_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17818..19233
DNA (1416bp) protein (472aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Glutamine synthetase n=2 Tax=Variovorax paradoxus RepID=C5CTT3_VARPS
SCNpilot_bf_inoc_scaffold_1626_curated_19
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19246..20082
DNA (837bp) protein (279aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
dapF; diaminopimelate epimerase DapF (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Clostridium sp. CAG:505 RepID=R7ALX9_9CLOT
SCNpilot_bf_inoc_scaffold_1626_curated_20
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20084..21301
DNA (1218bp) protein (406aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
dapL1; LL-diaminopimelate aminotransferase DapL (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IGF3_9FIRM
SCNpilot_bf_inoc_scaffold_1626_curated_21
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21430..22638
DNA (1209bp) protein (403aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
ntrB; signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUJ4_9BURK
SCNpilot_bf_inoc_scaffold_1626_curated_22
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22635..24050
DNA (1416bp) protein (472aa)
Nitrogen metabolism transcriptional regulator NtrC n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HP44_RUBGI
ntrC; nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
Nitrogen metabolism transcriptional regulator NtrC {ECO:0000313|EMBL:BAL94781.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_bf_inoc_scaffold_1626_curated_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24132..24863
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMD1_RUBGI
hypothetical protein; K07491 putative transposase
Uncharacterized protein {ECO:0000313|EMBL:BAL94168.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_bf_inoc_scaffold_1626_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24944..29566
DNA (4623bp) protein (1541aa)
Glutamate synthase (Ferredoxin) {ECO:0000313|EMBL:ADU35454.1}; EC=1.4.7.1 {ECO:0000313|EMBL:ADU35454.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
glutamate synthase (ferredoxin) (EC:1.4.7.1); K00284 glutamate synthase (ferredoxin) [EC:1.4.7.1]
glutamate synthase n=1 Tax=Caldimonas manganoxidans RepID=UPI000373BC0B
Displaying 24 items

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