ggKbase home page

SCNpilot_bf_inoc_scaffold_1198_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1198_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..160)
DNA (159bp) protein (53aa)
DksA/TraR C4-type zinc finger protein
Variovorax paradoxus strain MEDvA23 contig_89, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21251.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
swib/mdm2 domain-containing protein id=5081281 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
SCNpilot_bf_inoc_scaffold_1198_curated_2
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(347..1495)
DNA (1149bp) protein (383aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
nrdB; ribonucleoside-diphosphate reductase, beta subunit NrdB (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRM7_9BURK
SCNpilot_bf_inoc_scaffold_1198_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1629..4538)
DNA (2910bp) protein (970aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
ribonucleoside-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Variovorax paradoxus RepID=UPI00036CF8B3
SCNpilot_bf_inoc_scaffold_1198_curated_4
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4878..5486)
DNA (609bp) protein (203aa)
Candidate amidase protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y016_RAMTT
ampD; amidase; K03806 AmpD protein
Candidate amidase protein {ECO:0000313|EMBL:AEG94565.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1198_curated_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5473..7005)
DNA (1533bp) protein (511aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUH2_DELSC
AAA domain family protein {ECO:0000313|EMBL:KFJ10841.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
two component, sigma54 specific, Fis family transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR
SCNpilot_bf_inoc_scaffold_1198_curated_6
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7028..8767)
DNA (1740bp) protein (580aa)
integral membrane sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VSQ1_POLNA
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_bf_inoc_scaffold_1198_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8767..8994)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MS08_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91998.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K06950 uncharacterized protein
SCNpilot_bf_inoc_scaffold_1198_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8991..9800)
DNA (810bp) protein (270aa)
Cytochrome c assembly protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IE63_9BURK
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:AFU47656.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_1198_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9904..11331
DNA (1428bp) protein (476aa)
signal recognition particle protein Srp54 n=1 Tax=Variovorax paradoxus RepID=UPI00036346E1
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_bf_inoc_scaffold_1198_curated_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11433..12572)
DNA (1140bp) protein (380aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J2TSN5_9BURK
branched chain amino acid ABC transporter periplasmic protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1198_curated_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12670..13791
DNA (1122bp) protein (374aa)
Putative zinc protease protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VT20_POLNA
putative zinc protease
Putative zinc protease protein {ECO:0000313|EMBL:ABM38798.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_bf_inoc_scaffold_1198_curated_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13815..14069)
DNA (255bp) protein (85aa)
Acyl-coA-binding protein, ACBP n=2 Tax=Acidovorax RepID=A1W381_ACISJ
acyl-CoA-binding protein acbp
Acyl-coA-binding protein ACBP {ECO:0000313|EMBL:ACM31930.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_1198_curated_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14132..14800)
DNA (669bp) protein (223aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J0KR74_9BURK
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_1198_curated_14
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14810..15109)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221E0_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD68363.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_bf_inoc_scaffold_1198_curated_15
unknown

Not on your lists

15206..15499
DNA (294bp) protein (98aa)

This feature has no annotations

Displaying 15 items

View Taxonomy