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SCNpilot_bf_inoc_scaffold_2085_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_2085_curated_1
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..198
DNA (198bp) protein (66aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Acidovorax sp. CF316 RepID=J0KH19_9BURK
pyridoxine/pyridoxamine 5'-phosphate oxidase-like
SCNpilot_bf_inoc_scaffold_2085_curated_2
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(231..1142)
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U8_POLSJ
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE46444.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_2085_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1254..3035
DNA (1782bp) protein (594aa)
glyoxylate carboligase (EC:4.1.1.47); K01608 tartronate-semialdehyde synthase [EC:4.1.1.47]
Glyoxylate carboligase n=3 Tax=Bacteria RepID=S2WB44_DELAC
Glyoxylate carboligase {ECO:0000313|EMBL:EPD35410.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_bf_inoc_scaffold_2085_curated_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3052..3831
DNA (780bp) protein (260aa)
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
hydroxypyruvate isomerase n=1 Tax=Curvibacter lanceolatus RepID=UPI000381AC10
SCNpilot_bf_inoc_scaffold_2085_curated_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3864..4757
DNA (894bp) protein (298aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:ACL58028.1}; EC=1.1.1.60 {ECO:0000313|EMBL:ACL58028.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
2-hydroxy-3-oxopropionate reductase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJI0_METNO
SCNpilot_bf_inoc_scaffold_2085_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4823..6094
DNA (1272bp) protein (424aa)
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81]
Putative glycerate kinase n=1 Tax=Acidovorax sp. CF316 RepID=J1EJL3_9BURK
Hydroxypyruvate reductase {ECO:0000313|EMBL:GAO27467.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_2085_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6104..7225
DNA (1122bp) protein (374aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
pykA2; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN74_RALME
SCNpilot_bf_inoc_scaffold_2085_curated_8
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7263..7472
DNA (210bp) protein (70aa)
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:KIL98557.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
pyruvate kinase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037BAFFF
SCNpilot_bf_inoc_scaffold_2085_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7939..9078
DNA (1140bp) protein (380aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:EIK88688.1}; EC=3.5.4.25 {ECO:0000313|EMBL:EIK88688.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHJ8_9BURK
SCNpilot_bf_inoc_scaffold_2085_curated_10
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9090..9554
DNA (465bp) protein (155aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000255|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000255|HAMAP-Rule:MF_00178};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Curvibacter lanceolatus RepID=UPI00037BA9B6
SCNpilot_bf_inoc_scaffold_2085_curated_11
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9551..10093
DNA (543bp) protein (181aa)
N utilization substance protein B homolog n=1 Tax=Acidovorax sp. NO-1 RepID=H0C187_9BURK
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
nusB; N utilization substance protein B; K03625 N utilization substance protein B
SCNpilot_bf_inoc_scaffold_2085_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10090..11307
DNA (1218bp) protein (406aa)
Putative aminotransferase n=1 Tax=Variovorax paradoxus B4 RepID=T1XCI2_VARPD
putative aminotransferase
Putative aminotransferase {ECO:0000313|EMBL:AGU50268.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_2085_curated_13
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11323..11739
DNA (417bp) protein (139aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395CFBE
tol-pal system-associated acyl-CoA thioesterase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_2085_curated_14
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11736..12449
DNA (714bp) protein (238aa)
tolQ; biopolymer transport protein; K03562 biopolymer transport protein TolQ
protein TolQ; K03562 biopolymer transport protein TolQ id=12551108 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_bf_inoc_scaffold_2085_curated_15
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12493..12864
DNA (372bp) protein (124aa)
TolR protein n=2 Tax=Sutterella wadsworthensis RepID=E7H3M2_9BURK
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:KDB52361.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
TolR-like translocation protein; K03560 biopolymer transport protein TolR
SCNpilot_bf_inoc_scaffold_2085_curated_16
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12875..13951
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003663B9D
TonB-like protein; K03646 colicin import membrane protein
TonB-like {ECO:0000313|EMBL:ABD68895.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_bf_inoc_scaffold_2085_curated_17
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14073..14516)
DNA (444bp) protein (148aa)
glyoxalase I n=1 Tax=Variovorax paradoxus RepID=UPI000370810E
Lactoylglutathione lyase {ECO:0000313|EMBL:EGI77172.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
lactoylglutathione lyase
SCNpilot_bf_inoc_scaffold_2085_curated_18
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14920..15966
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H5Q5_PSEAC
dctP; putative TRAP dicarboxylate transporter subunit DctP
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_2085_curated_19
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16075..16617
DNA (543bp) protein (181aa)
Putative TRAP dicarboxylate transporter subunit DctQ n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AT80_PSERE
dctQ; putative TRAP dicarboxylate transporter subunit DctQ
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_bf_inoc_scaffold_2085_curated_20
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17020..17862
DNA (843bp) protein (281aa)
TRAP-type C4-dicarboxylate transport system n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W963_MAGSA
TRAP-type C4-dicarboxylate transport system
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_bf_inoc_scaffold_2085_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17930..19465)
DNA (1536bp) protein (512aa)
long-chain-fatty-acid CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY4_9BURK
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EIK91624.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_2085_curated_22
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19668..20492)
DNA (825bp) protein (275aa)
metallophosphatase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CB81E
metallophosphoesterase
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_bf_inoc_scaffold_2085_curated_23
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20496..21272)
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLM8_POLNA
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM36556.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_bf_inoc_scaffold_2085_curated_24
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21443..22648)
DNA (1206bp) protein (402aa)
Ankyrin repeat-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EKX7_9BURK
Ankyrin repeat-containing protein {ECO:0000313|EMBL:EJE52921.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2085_curated_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22645..23244)
DNA (600bp) protein (200aa)
RNA polymerase sigma factor, sigma-70 family id=1261993 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ECF subfamily RNA polymerase sigma-24 subunit
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_2085_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23302..24162)
DNA (861bp) protein (287aa)
hypothetical protein id=5079435 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_2085_curated_27
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24670..25086)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7K0_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59556.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
Displaying 27 items

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