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SCNpilot_bf_inoc_scaffold_1403_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1403_curated_1
unknown

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2..85
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1403_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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280..663
DNA (384bp) protein (128aa)
secE; preprotein translocase subunit SecE id=12551362 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
secE; preprotein translocase SecE subunit; K03073 preprotein translocase subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_1403_curated_3
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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663..1241
DNA (579bp) protein (193aa)
transcription antitermination protein NusG n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002FD2219
NusG antitermination factor; K02601 transcriptional antiterminator NusG
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1403_curated_4
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1367..1798
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KUX3_9BURK
similar to Plastid ribosomal protein L11 large ribosomal subunit
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1403_curated_5
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1799..2494
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Variovorax paradoxus RepID=UPI000364CEDF
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1403_curated_6
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2764..3270
DNA (507bp) protein (169aa)
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=12551358 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1403_curated_7
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3315..3692
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000305E621
similar to chloroplast 50S ribosomal protein L7
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_1403_curated_8
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4054..8166
DNA (4113bp) protein (1371aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax sp. NO-1 RepID=H0C457_9BURK
SCNpilot_bf_inoc_scaffold_1403_curated_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8190..12425
DNA (4236bp) protein (1412aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5J1_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_1403_curated_10
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12502..13080
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0T8_RAMTT
hypothetical protein; K03744 LemA protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94682.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1403_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13080..14408
DNA (1329bp) protein (443aa)
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
16S rRNA methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003799FD4
SCNpilot_bf_inoc_scaffold_1403_curated_12
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14353..14997
DNA (645bp) protein (215aa)
Putative proline rich signal peptide protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SG0_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_bf_inoc_scaffold_1403_curated_13
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14994..17312
DNA (2319bp) protein (773aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0T5_RAMTT
histidine kinase
SCNpilot_bf_inoc_scaffold_1403_curated_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17342..18052
DNA (711bp) protein (237aa)
Candidate response regulator, Fis n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0T4_RAMTT
response regulator Fis
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1403_curated_15
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18226..18678)
DNA (453bp) protein (151aa)
lytic transglycosylase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395D827
Lytic murein transglycosylase {ECO:0000313|EMBL:ENO79766.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
membrane bound lytic murein transglycosylase b transmembrane protein
SCNpilot_bf_inoc_scaffold_1403_curated_16
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18651..19412)
DNA (762bp) protein (254aa)
lytic transglycosylase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395D827
Lytic murein transglycosylase family protein {ECO:0000313|EMBL:KIN89531.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
lytic murein transglycosylase
SCNpilot_bf_inoc_scaffold_1403_curated_17
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19930..20217)
DNA (288bp) protein (96aa)
Excinuclease ABC, C subunit-like protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7NV89_9GAMM
Excinuclease ABC, C subunit-like protein {ECO:0000313|EMBL:EMR12678.1}; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lonarensis MPL.;"
Excinuclease ABC, C subunit-like protein
SCNpilot_bf_inoc_scaffold_1403_curated_18
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20739..21917
DNA (1179bp) protein (393aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EDM70103.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EDM70103.1};; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. AzwK-3b.;"
hypothetical protein; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
Aspartyl-tRNA synthetase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FUT8_9RHOB
SCNpilot_bf_inoc_scaffold_1403_curated_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22023..23318
DNA (1296bp) protein (432aa)
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
UDP-glucose/GDP-mannose dehydrogenase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA73_ACISJ
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:ABM43148.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_1403_curated_20
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23599..24543
DNA (945bp) protein (315aa)
oxidoreductase domain-containing protein; K13016 UDP-D-GlcNAcA oxidase [EC:1.1.1.-]
Oxidoreductase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA74_ACISJ
Oxidoreductase domain protein {ECO:0000313|EMBL:ABM43149.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_1403_curated_21
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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24726..25310
DNA (585bp) protein (195aa)
Acetyltransferase n=1 Tax=Pseudomonas mendocina DLHK RepID=J7TLZ2_PSEME
acetyltransferase
UDP-2-acetamido-3-amino-2,3-dideoxy-d-glucuronic acid N-acetyltransferase, WbpD {ECO:0000313|EMBL:EXF44006.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
SCNpilot_bf_inoc_scaffold_1403_curated_22
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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25357..25611
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AGC4_NITEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI59608.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
SCNpilot_bf_inoc_scaffold_1403_curated_23
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25614..26042
DNA (429bp) protein (143aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Ribonuclease VapC n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WA87_ACISJ
PilT domain-containing protein
SCNpilot_bf_inoc_scaffold_1403_curated_24
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26098..26355
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124X8_POLSJ
Plasmid stability protein {ECO:0000313|EMBL:BAO79986.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1403_curated_25
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26352..26786
DNA (435bp) protein (145aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
PilT protein-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124X9_POLSJ
PilT protein-like protein; K07062
SCNpilot_bf_inoc_scaffold_1403_curated_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26792..28075
DNA (1284bp) protein (428aa)
Degt/dnrj/eryc1/strs aminotransferase {ECO:0000313|EMBL:EIK89354.1}; EC=2.6.1.- {ECO:0000313|EMBL:EIK89354.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Degt/dnrj/eryc1/strs aminotransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJG4_9BURK
DegT/DnrJ/EryC1/StrS aminotransferase
SCNpilot_bf_inoc_scaffold_1403_curated_27
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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28225..28512
DNA (288bp) protein (96aa)
XRE family transcriptional regulator n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00030735D0
Putative transcriptional regulator with C-terminal CBS domains {ECO:0000313|EMBL:EIC22581.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
XRE family transcriptional regulator
SCNpilot_bf_inoc_scaffold_1403_curated_28
unknown

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28506..28640
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1403_curated_29
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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29148..30335
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035E9002
Uncharacterized protein {ECO:0000313|EMBL:EOP91210.1}; TaxID=1053235 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus VD140.;"
O-antigen flippase Wzx
SCNpilot_bf_inoc_scaffold_1403_curated_30
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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30439..32256
DNA (1818bp) protein (606aa)
Asparagine synthetase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I856_9BURK
asparagine synthase
Asparagine synthase {ECO:0000313|EMBL:AFU45176.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying items 1-30 of 33 in total

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