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SCNpilot_bf_inoc_scaffold_3089_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_3089_curated_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..369
DNA (369bp) protein (123aa)
lysS; lysine--tRNA ligase LysS (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Lysine--tRNA ligase n=1 Tax=Variovorax paradoxus (strain S110) RepID=SYK_VARPS
SCNpilot_bf_inoc_scaffold_3089_curated_2
unknown

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comp(461..871)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_3089_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1072..1404
DNA (333bp) protein (111aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWL8_ALIDB
ferredoxin, C-terminal protein; K05524 ferredoxin
Ferredoxin, C-terminal protein {ECO:0000313|EMBL:AEB85444.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_3089_curated_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1565..1786
DNA (222bp) protein (74aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8R9_ACIDE
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:EER59136.1}; Flags: Fragment;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SCNpilot_bf_inoc_scaffold_3089_curated_5
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2521..3489
DNA (969bp) protein (323aa)
polyphosphate kinase 1 (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
polyphosphate kinase n=1 Tax=Acidovorax avenae RepID=UPI0003686414
SCNpilot_bf_inoc_scaffold_3089_curated_6
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3438..3959
DNA (522bp) protein (174aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
Polyphosphate kinase n=1 Tax=Acidovorax sp. CF316 RepID=J0UG00_9BURK
SCNpilot_bf_inoc_scaffold_3089_curated_7
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3956..4420
DNA (465bp) protein (155aa)
Phosphohistidine phosphatase SixA n=1 Tax=Acidovorax sp. CF316 RepID=J1ES79_9BURK
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EJE55051.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
phosphohistidine phosphatase SixA
SCNpilot_bf_inoc_scaffold_3089_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4587..4853
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR52_ALIDB
transposase is3/is911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:AEB84790.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_3089_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4871..5683
DNA (813bp) protein (271aa)
Integrase catalytic region protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR51_ALIDB
integrase catalytic region protein
Integrase catalytic region {ECO:0000313|EMBL:AEB86137.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_3089_curated_10
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5718..5963)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XEP1_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23805.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCNpilot_bf_inoc_scaffold_3089_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5960..7060)
DNA (1101bp) protein (367aa)
TrbI-like protein n=1 Tax=Pseudomonas aeruginosa U2504 RepID=U8ZR26_PSEAI
Conjugative transfer protein TrbI {ECO:0000313|EMBL:GAO26454.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_bf_inoc_scaffold_3089_curated_12
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7057..7971)
DNA (915bp) protein (305aa)
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 id=12551703 bin=BDI species=Delftia acidovorans genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Type IV secretory system Conjugative DNA transfer {ECO:0000313|EMBL:KCV66885.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_bf_inoc_scaffold_3089_curated_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8189..8419)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ6_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34934.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_3089_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9388..10881)
DNA (1494bp) protein (498aa)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3); K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:AEB85349.1}; EC=4.1.99.3 {ECO:0000313|EMBL:AEB85349.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Deoxyribodipyrimidine photo-lyase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5U2_ALIDK
SCNpilot_bf_inoc_scaffold_3089_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10889..11578)
DNA (690bp) protein (230aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5U1_ALIDK
Glutathione S-transferase domain protein {ECO:0000313|EMBL:AEB85348.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_3089_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11575..12054)
DNA (480bp) protein (160aa)
Isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5U0_ALIDK
isomerase
Isomerase {ECO:0000313|EMBL:AEB85347.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_3089_curated_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12058..12840)
DNA (783bp) protein (261aa)
short-chain dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036668F4
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAD24974.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_bf_inoc_scaffold_3089_curated_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12845..13381)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI00036773A7
Uncharacterized protein {ECO:0000313|EMBL:GAD24973.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_3089_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13386..13643)
DNA (258bp) protein (86aa)
Major facilitator superfamily MFS_1 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5T7_ALIDK
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB85344.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying 19 items

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