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SCNpilot_bf_inoc_scaffold_590_curated

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Displaying items 121-150 of 159 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_590_curated_121
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(122287..122472)
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1E4_RAMTT
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_590_curated_122
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(122487..123011)
DNA (525bp) protein (175aa)
30S ribosomal protein S5 n=2 Tax=Acidovorax RepID=RS5_ACIET rbh
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_590_curated_123
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(123024..123389)
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=4 Tax=Delftia RepID=RL18_DELAS
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_bf_inoc_scaffold_590_curated_124
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(123401..123934)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000372DE7A
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_bf_inoc_scaffold_590_curated_125
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(123947..124342)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=2 Tax=Acidovorax RepID=RS8_ACIAC
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_bf_inoc_scaffold_590_curated_126
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(124361..124666)
DNA (306bp) protein (102aa)
UPI0003D3D3F5 related cluster n=1 Tax=unknown RepID=UPI0003D3D3F5
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_bf_inoc_scaffold_590_curated_127
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(124676..125215)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MV20_9BURK
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_bf_inoc_scaffold_590_curated_128
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(125224..125541)
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2J1_9BURK
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_bf_inoc_scaffold_590_curated_129
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(125551..125919)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTP0_9BURK
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
SCNpilot_bf_inoc_scaffold_590_curated_130
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125906..127624)
DNA (1719bp) protein (573aa)
glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:AEB86674.1}; EC=1.1.5.3 {ECO:0000313|EMBL:AEB86674.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUG8_ALIDB
SCNpilot_bf_inoc_scaffold_590_curated_131
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127821..129344)
DNA (1524bp) protein (508aa)
glpK; glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30]
Glycerol kinase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I1F8_BORPD
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_590_curated_132
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129438..130277
DNA (840bp) protein (280aa)
proC; pyrroline-5-carboxylate reductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655
Pyrroline-5-carboxylate reductase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1F4_RAMTT
SCNpilot_bf_inoc_scaffold_590_curated_133
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130494..131288
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KL70_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE51943.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_590_curated_134
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131295..132176)
DNA (882bp) protein (294aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
4-hydroxybenzoate polyprenyl transferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MV33_9BURK
SCNpilot_bf_inoc_scaffold_590_curated_135
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132258..133217)
DNA (960bp) protein (320aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J0TXD8_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJE48577.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
SCNpilot_bf_inoc_scaffold_590_curated_136
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133303..134073)
DNA (771bp) protein (257aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AVL3_DELSC
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEF92102.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_bf_inoc_scaffold_590_curated_137
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134227..136344
DNA (2118bp) protein (706aa)
CoA-binding domain protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AVL5_DELSC
CoA-binding domain-containing protein
CoA-binding domain protein {ECO:0000313|EMBL:AEF92104.1}; Flags: Precursor;; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_bf_inoc_scaffold_590_curated_138
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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136399..137355
DNA (957bp) protein (319aa)
bugT protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C3533
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP88868.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
extra-cytoplasmic solute receptor
SCNpilot_bf_inoc_scaffold_590_curated_139
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137382..138764
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B1F7A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU51878.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_590_curated_140
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138767..140119
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036F90A8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU51879.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_590_curated_141
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140116..141369
DNA (1254bp) protein (418aa)
Beta-lactamase domain-containing protein n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RX18_COMTE
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:EHN63194.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
beta-lactamase domain-containing protein
SCNpilot_bf_inoc_scaffold_590_curated_142
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141391..142371
DNA (981bp) protein (327aa)
Putative Bug-like extracytoplasmic solute binding receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XH88_VARPD
putative Bug-like extracytoplasmic solute binding receptor, TTT family
Putative Bug-like extracytoplasmic solute binding receptor, TTT family {ECO:0000313|EMBL:AGU51881.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_bf_inoc_scaffold_590_curated_143
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142398..144500)
DNA (2103bp) protein (701aa)
recG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
Candidate ATP-dependent DNA helicase recG n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1F8_RAMTT
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_590_curated_144
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144573..145826
DNA (1254bp) protein (418aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KTQ8_9BURK
SCNpilot_bf_inoc_scaffold_590_curated_145
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146078..147406
DNA (1329bp) protein (443aa)
Methyltransferase type 12 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB91_ACISJ
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABM43516.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_590_curated_146
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147417..148589
DNA (1173bp) protein (391aa)
Queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Queuine tRNA-ribosyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7J9_ALIDK
SCNpilot_bf_inoc_scaffold_590_curated_147
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148690..149664
DNA (975bp) protein (325aa)
2-nitropropane dioxygenase npd; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase-like enzyme n=1 Tax=Acidovorax sp. CF316 RepID=J0KNW9_9BURK
2-nitropropane dioxygenase-like enzyme {ECO:0000313|EMBL:EJE52888.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_bf_inoc_scaffold_590_curated_148
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149774..150835)
DNA (1062bp) protein (354aa)
Candidate membrane protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1G5_RAMTT
membrane protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_590_curated_149
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150908..151699)
DNA (792bp) protein (264aa)
exodeoxyribonuclease III (EC:4.2.99.18); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Curvibacter lanceolatus RepID=UPI00035F171E
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_bf_inoc_scaffold_590_curated_150
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151713..152408
DNA (696bp) protein (232aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
Orotate phosphoribosyltransferase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6Y3_9BURK
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
Displaying items 121-150 of 159 in total

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