ggKbase home page

SCNpilot_bf_inoc_scaffold_590_curated

Search features with annotation key words

Displaying items 1-30 of 159 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_590_curated_1
unknown

Not on your lists

3..98
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_590_curated_2

Not on your lists

280..1302
DNA (1023bp) protein (341aa)
paaA; phenylacetate-CoA oxygenase subunit PaaA; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
Phenylacetate-CoA oxygenase, PaaG subunit n=1 Tax=uncultured bacterium RepID=C6KVI8_9BACT
Phenylacetate-CoA oxygenase, PaaG subunit {ECO:0000313|EMBL:BAH89986.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_bf_inoc_scaffold_590_curated_3

Not on your lists

1319..1618
DNA (300bp) protein (100aa)
Phenylacetic acid degradation B n=1 Tax=uncultured bacterium RepID=C6KVI9_9BACT
Phenylacetic acid degradation B {ECO:0000313|EMBL:BAH90295.1}; Phenylacetic acid degradation protein PaaB {ECO:0000313|EMBL:BAH89987.1}; Phenylacetic acid degradation protein PaaB subunit {ECO:0000313|EMBL:BAH90509.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
paaB; phenylacetate-CoA oxygenase subunit PaaB; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
SCNpilot_bf_inoc_scaffold_590_curated_4

Not on your lists

1674..2534
DNA (861bp) protein (287aa)
paaC; Phenylacetic acid degradation protein; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
Phenylacetate-CoA oxygenase, PaaI subunit n=1 Tax=uncultured bacterium RepID=C6KVJ0_9BACT
Phenylacetate-CoA oxygenase, PaaI subunit {ECO:0000313|EMBL:BAH89988.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_bf_inoc_scaffold_590_curated_5

Not on your lists

2556..3155
DNA (600bp) protein (200aa)
Phenylacetate-CoA oxygenase, PaaJ subunit n=1 Tax=uncultured bacterium RepID=C6KVJ1_9BACT
Phenylacetate-CoA oxygenase, PaaJ subunit {ECO:0000313|EMBL:BAH89989.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
paaD; Phenylacetic acid degradation protein; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
SCNpilot_bf_inoc_scaffold_590_curated_6

Not on your lists

3168..4271
DNA (1104bp) protein (368aa)
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=1 Tax=uncultured bacterium RepID=C6KVJ2_9BACT
Phenylacetate-CoA oxygenase/reductase, PaaK subunit {ECO:0000313|EMBL:BAH89990.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
SCNpilot_bf_inoc_scaffold_590_curated_7

Not on your lists

comp(4380..4937)
DNA (558bp) protein (186aa)
Rare lipoprotein A n=2 Tax=uncultured bacterium RepID=C6KVN2_9BACT
Rare lipoprotein A {ECO:0000313|EMBL:BAH89991.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rare lipoprotein A; K03642 rare lipoprotein A
SCNpilot_bf_inoc_scaffold_590_curated_8

Not on your lists

comp(5144..5986)
DNA (843bp) protein (281aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase n=1 Tax=uncultured bacterium RepID=C6KVN1_9BACT
SCNpilot_bf_inoc_scaffold_590_curated_9

Not on your lists

comp(5983..6780)
DNA (798bp) protein (266aa)
hypothetical protein; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
Hemolysin A n=1 Tax=uncultured bacterium RepID=C6KVN0_9BACT
Hemolysin A {ECO:0000313|EMBL:BAH90027.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_bf_inoc_scaffold_590_curated_10

Not on your lists

comp(6841..8277)
DNA (1437bp) protein (479aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
s-adenosyl-l-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase n=1 Tax=uncultured bacterium RepID=C6KVM9_9BACT
SCNpilot_bf_inoc_scaffold_590_curated_11
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8499..8753
DNA (255bp) protein (85aa)
addiction module antitoxin n=1 Tax=Pseudomonas geniculata RepID=UPI00029AE171
addiction module antidote protein, CC2985 family
Tax=CG_Rhodof_04
SCNpilot_bf_inoc_scaffold_590_curated_12
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8750..9058
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VK49_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45191.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_bf_inoc_scaffold_590_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9076..10701
DNA (1626bp) protein (542aa)
Peptide chain release factor 3 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G640_ALIDK
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
peptide chain release factor 3; K02837 peptide chain release factor 3
SCNpilot_bf_inoc_scaffold_590_curated_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12177..12542
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI00031BA4C4
Putative membrane protein {ECO:0000313|EMBL:KFJ14128.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_590_curated_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12610..12957
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9C194_DELAS
hypothetical protein; K12962 undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
Uncharacterized protein {ECO:0000313|EMBL:ABX38557.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_bf_inoc_scaffold_590_curated_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12968..13924
DNA (957bp) protein (319aa)
glycosyl transferase family 2 n=1 Tax=Acidovorax avenae RepID=UPI000301B4EA
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADX47871.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_590_curated_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13921..14742
DNA (822bp) protein (274aa)
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3N8_ACISJ
HAD family hydrolase; K07024
HAD-superfamily hydrolase, subfamily IIB {ECO:0000313|EMBL:ABM40863.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_590_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15000..19001
DNA (4002bp) protein (1334aa)
delta-1-pyrroline-5-carboxylate dehydrogenase; K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWK3_ALIDB
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:ADU99526.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_590_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19104..20606
DNA (1503bp) protein (501aa)
Sodium/proline symporter n=2 Tax=Alicycliphilus denitrificans RepID=E8TWK2_ALIDB
SSS sodium solute transporter superfamily; K11928 sodium/proline symporter
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:AEB85460.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_590_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20631..21251)
DNA (621bp) protein (207aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TV18_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84031.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_590_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21248..21895)
DNA (648bp) protein (216aa)
hypothetical protein; K07152 id=12550445 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
electron transport protein SCO1/SenC; K07152
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_590_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21918..22523)
DNA (606bp) protein (202aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8TV16_ALIDB
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ADV00548.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_590_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22537..23187)
DNA (651bp) protein (217aa)
Cytochrome C oxidase mono-heme subunit/FixO n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV15_ALIDB
cytochrome c oxidase mono-heme subunit/fixo; K00405 cytochrome c oxidase cbb3-type subunit II
Cytochrome c oxidase mono-heme subunit/fixo {ECO:0000313|EMBL:GAO22328.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_590_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23177..24832)
DNA (1656bp) protein (552aa)
cytochrome-c oxidase (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
Cytochrome-c oxidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TV14_ALIDB
Cytochrome-c oxidase {ECO:0000313|EMBL:GAO23940.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_590_curated_25
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25059..30986)
DNA (5928bp) protein (1976aa)
Excinuclease ABC, A subunit n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TV93_ACIAC
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
SCNpilot_bf_inoc_scaffold_590_curated_26
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31210..31335)
DNA (126bp) protein (42aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q6R9_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX48127.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_bf_inoc_scaffold_590_curated_27
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31275..32516)
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2L9_ACIDE
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EER61264.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
major facilitator superfamily transporter
SCNpilot_bf_inoc_scaffold_590_curated_28
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33502..33810
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI000382E2F9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP33754.1}; Flags: Precursor;; TaxID=312153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter.;" source="Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 /; CIP 109841 / QLW-P1DMWA-1).;"
SCNpilot_bf_inoc_scaffold_590_curated_29
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33807..35534
DNA (1728bp) protein (576aa)
SSS sodium solute transporter superfamily n=2 Tax=Delftia RepID=A9C1C2_DELAS
SSS family solute/sodium (Na+) symporter; K14393 cation/acetate symporter
Cation/acetate symporter {ECO:0000313|EMBL:EZP57895.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
SCNpilot_bf_inoc_scaffold_590_curated_30
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35701..36345)
DNA (645bp) protein (215aa)
Exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003762CFD
Putative DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:EFV94958.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Displaying items 1-30 of 159 in total

View Taxonomy