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SCNpilot_bf_inoc_scaffold_535_curated

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_535_curated_1
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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41..673
DNA (633bp) protein (211aa)
type I restriction-modification system subunit S; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
probable type I restriction-modification system n=1 Tax=Burkholderia pseudomallei RepID=UPI00016B0992
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
SCNpilot_bf_inoc_scaffold_535_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

801..1802
DNA (1002bp) protein (334aa)
UPI0003D3BCC2 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3BCC2
Uncharacterized protein {ECO:0000313|EMBL:GAD24752.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
heat shock protein DnaJ domain-containing protein
SCNpilot_bf_inoc_scaffold_535_curated_3
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2235..2864
DNA (630bp) protein (210aa)
Transcriptional regulator, ArsR family n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TI36_ACIAC
DNA polymerase subunit beta
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABM30624.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_535_curated_4
unknown

Not on your lists

2812..2937
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_535_curated_5
unknown

Not on your lists

comp(4092..4322)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_535_curated_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4499..6091
DNA (1593bp) protein (531aa)
type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00038274CC
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_535_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6108..7853
DNA (1746bp) protein (582aa)
UPI0003AA51D4 related cluster n=1 Tax=unknown RepID=UPI0003AA51D4
Acetyl/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:GAD23818.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
biotin carboxylase
SCNpilot_bf_inoc_scaffold_535_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7980..8561)
DNA (582bp) protein (194aa)
Methionine biosynthesis protein MetW n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V051_VARPE
methionine biosynthesis protein metw
Methionine biosynthesis protein MetW {ECO:0000313|EMBL:ADU40160.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_bf_inoc_scaffold_535_curated_9
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8558..9748)
DNA (1191bp) protein (397aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
metX; homoserine O-acetyltransferase MetX (EC:2.3.1.31)
Homoserine O-acetyltransferase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KWT1_9BURK
SCNpilot_bf_inoc_scaffold_535_curated_10
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9833..10084)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ26_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR73667.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_535_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10106..10672)
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYT1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV02090.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_535_curated_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11060..11626
DNA (567bp) protein (189aa)
RNA-binding protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000308ED7A
RNA-binding protein {ECO:0000313|EMBL:KJA11688.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
RNP-1 like RNA-binding protein
SCNpilot_bf_inoc_scaffold_535_curated_13
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11702..12493)
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T870_ACIDE
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EER59334.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
short chain dehydrogenase
SCNpilot_bf_inoc_scaffold_535_curated_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12512..13129)
DNA (618bp) protein (206aa)
Candidate 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y351_RAMTT
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K11719 lipopolysaccharide export system protein LptC
Candidate 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase {ECO:0000313|EMBL:AEG94931.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_535_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13126..13695)
DNA (570bp) protein (190aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family id=1293894 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_bf_inoc_scaffold_535_curated_16
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13695..14672)
DNA (978bp) protein (326aa)
kdsD; Arabinose 5-phosphate isomerase; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
Candidate Arabinose 5-phosphate isomerase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y352_RAMTT
Candidate Arabinose 5-phosphate isomerase {ECO:0000313|EMBL:AEG94932.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_535_curated_17
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14708..16693
DNA (1986bp) protein (662aa)
Candidate membrane component of K+ transport systems, Kef type n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y353_RAMTT
membrane component of K+ transport systems, Kef type; K03455 monovalent cation:H+ antiporter-2, CPA2 family
Candidate membrane component of K+ transport systems, Kef type {ECO:0000313|EMBL:AEG94933.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_535_curated_18
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16715..17272
DNA (558bp) protein (186aa)
adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Adenine phosphoribosyltransferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=APT_ACIET rbh
SCNpilot_bf_inoc_scaffold_535_curated_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17414..18064
DNA (651bp) protein (217aa)
Transcriptional regulator, TetR family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WZY0_COMTE
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EED68202.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_535_curated_20
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18178..19815
DNA (1638bp) protein (546aa)
carboxyl transferase; K13778 geranyl-CoA carboxylase beta subunit [EC:6.4.1.5]
Carboxyl transferase n=1 Tax=Comamonas testosteroni S44 RepID=D8DC22_COMTE
3-methylcrotonyl-CoA carboxylase subunit beta {ECO:0000313|EMBL:KGH08149.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_bf_inoc_scaffold_535_curated_21
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20056..21225
DNA (1170bp) protein (390aa)
acyl-CoA dehydrogenase; K11731 citronellyl-CoA dehydrogenase [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RW85_COMTE
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EHN63432.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
SCNpilot_bf_inoc_scaffold_535_curated_22
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21410..23386
DNA (1977bp) protein (659aa)
carbamoyl-phosphate synthase L chain; K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
Carbamoyl-phosphate synthase L chain n=1 Tax=Comamonas testosteroni S44 RepID=D8DC25_COMTE
Carbamoyl-phosphate synthase L chain {ECO:0000313|EMBL:EFI59524.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
SCNpilot_bf_inoc_scaffold_535_curated_23
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23396..24559
DNA (1164bp) protein (388aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
AcyL-CoA dehydrogenase domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT30_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_535_curated_24
Gordonia neofelifaecis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24611..26167
DNA (1557bp) protein (519aa)
O-succinylbenzoate-CoA ligase n=1 Tax=Gordonia neofelifaecis NRRL B-59395 RepID=F1YEE5_9ACTO
O-succinylbenzoate-CoA ligase {ECO:0000313|EMBL:EGD56778.1}; TaxID=644548 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia neofelifaecis NRRL B-59395.;"
AMP-dependent synthetase and ligase
SCNpilot_bf_inoc_scaffold_535_curated_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26220..27809
DNA (1590bp) protein (530aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RW78_COMTE
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EHN63425.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
long-chain-fatty-acid--CoA ligase
SCNpilot_bf_inoc_scaffold_535_curated_26
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27820..28500
DNA (681bp) protein (227aa)
Aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IJX3_9BRAD
Glutathione S-transferase {ECO:0000313|EMBL:KJC39056.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
glutathione S-transferase-like protein
SCNpilot_bf_inoc_scaffold_535_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28660..29274)
DNA (615bp) protein (205aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CUU9_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL78974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, branched-chain amino acid-binding protein
SCNpilot_bf_inoc_scaffold_535_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29857..31020)
DNA (1164bp) protein (388aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CUU9_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL78974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, branched-chain amino acid-binding protein
SCNpilot_bf_inoc_scaffold_535_curated_29
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31064..32923)
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HUI6_9BURK
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:AFU44402.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
AMP-dependent synthetase and ligase
SCNpilot_bf_inoc_scaffold_535_curated_30
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32929..33732)
DNA (804bp) protein (268aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein id=12552754 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 1-30 of 90 in total

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