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SCNpilot_bf_inoc_scaffold_535_curated

Search features with annotation key words

Displaying items 61-90 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_535_curated_61
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64988..65317)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y246_RAMTT
hypothetical protein; K03210 preprotein translocase subunit YajC
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_bf_inoc_scaffold_535_curated_62
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65576..69181)
DNA (3606bp) protein (1202aa)
indolepyruvate ferredoxin oxidoreductase subunits alpha and beta; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
Candidate indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y247_RAMTT
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_535_curated_63
unknown

Not on your lists

comp(69366..69836)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_535_curated_64
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69931..71052)
DNA (1122bp) protein (374aa)
MltA domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IAG5_9BURK
MltA domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_535_curated_65
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71087..71236
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHA6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88596.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_bf_inoc_scaffold_535_curated_66
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71261..71881)
DNA (621bp) protein (207aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036B8928
Response regulator {ECO:0000313|EMBL:EJL79739.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
response regulator receiver protein; K11712 two-component system, LuxR family, response regulator DctR
SCNpilot_bf_inoc_scaffold_535_curated_67
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71987..73177
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRW4_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24980.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_535_curated_68
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73555..74034)
DNA (480bp) protein (160aa)
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein n=2 Tax=Delftia acidovorans RepID=S2WGQ3_DELAC
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_535_curated_69
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74166..75470
DNA (1305bp) protein (435aa)
fad dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UWA3_VARPE
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_535_curated_70
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75551..76147)
DNA (597bp) protein (199aa)
Zinc metalloprotease n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0C7_9BURK
zinc metalloprotease
Zinc metalloprotease {ECO:0000313|EMBL:AFU46507.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_535_curated_71
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77020..78540)
DNA (1521bp) protein (507aa)
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395BE75
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EHL24776.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
methylmalonate-semialdehyde dehydrogenase
SCNpilot_bf_inoc_scaffold_535_curated_72
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78625..79983)
DNA (1359bp) protein (453aa)
Beta-alanine--pyruvate transaminase {ECO:0000313|EMBL:EZP56868.1}; EC=2.6.1.18 {ECO:0000313|EMBL:EZP56868.1};; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
beta-alanine--pyruvate transaminase (EC:2.6.1.18); K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Beta-alanine--pyruvate transaminase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9C1I5_DELAS
SCNpilot_bf_inoc_scaffold_535_curated_73
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80098..81057
DNA (960bp) protein (320aa)
Transcriptional regulator, LysR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBS1_ALIDK
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV02060.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_535_curated_74
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81311..83341)
DNA (2031bp) protein (677aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUT8_9BURK
two component transcriptional regulator, multi-sensor histidine kinase
SCNpilot_bf_inoc_scaffold_535_curated_75
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83394..84224)
DNA (831bp) protein (277aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K01501 nitrilase [EC:3.5.5.1]
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUT7_9BURK
Tax=CG_Rhodof_04
SCNpilot_bf_inoc_scaffold_535_curated_76
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84221..88291)
DNA (4071bp) protein (1357aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QAA4_ACIAP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_535_curated_77
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88411..91215
DNA (2805bp) protein (935aa)
glutamate-ammonia-ligase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y255_RAMTT
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_535_curated_78
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91304..91915
DNA (612bp) protein (204aa)
hypothetical protein id=5081418 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_535_curated_79
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91966..92508)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036F9204
MOSC domain-containing protein
Tax=CG_Rhodof_04
SCNpilot_bf_inoc_scaffold_535_curated_80
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92505..93905)
DNA (1401bp) protein (467aa)
aminopeptidase P (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Peptidase m24 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG32_9BURK
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_535_curated_81
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93902..94678)
DNA (777bp) protein (259aa)
nucleotidyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036484A6
Nucleoside-diphosphate-sugar pyrophosphorylase {ECO:0000313|EMBL:GAD23350.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
SCNpilot_bf_inoc_scaffold_535_curated_82
unknown

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comp(94929..95234)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_535_curated_83
unknown

Not on your lists

comp(95612..95812)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_535_curated_84
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96031..96216
DNA (186bp) protein (62aa)
Addiction module antidote n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWH7_LEPCP
addiction module antidote
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_535_curated_85
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96252..96605
DNA (354bp) protein (118aa)
Death on curing protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WX80_DELAC
Death-on-curing protein {ECO:0000313|EMBL:KEH11246.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
Putative death-on-curing protein Doc
SCNpilot_bf_inoc_scaffold_535_curated_86
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96629..98272
DNA (1644bp) protein (548aa)
Carbohydrate kinase, FGGY n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W01_RHOFD
carbohydrate kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_535_curated_87
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98373..99137
DNA (765bp) protein (255aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RU6_RHOFD
extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:ABD71507.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_bf_inoc_scaffold_535_curated_88
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99158..99925
DNA (768bp) protein (256aa)
Amino acid ABC transporter membrane protein, PAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12A00_POLSJ
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
Amino acid ABC transporter membrane protein, PAAT family {ECO:0000313|EMBL:ABE44642.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_535_curated_89
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99903..100634
DNA (732bp) protein (244aa)
ABC transporter-like protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC transporter related n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RU4_RHOFD
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
SCNpilot_bf_inoc_scaffold_535_curated_90
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100835..102160
DNA (1326bp) protein (442aa)
hypothetical protein id=12552046 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 61-90 of 90 in total

View Taxonomy