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SCNpilot_bf_inoc_scaffold_1252_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1252_curated_1
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..117
DNA (117bp) protein (39aa)
translation elongation factor Tu (EC:2.7.7.4); K02358 elongation factor Tu
Elongation factor Tu n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZJ6_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
SCNpilot_bf_inoc_scaffold_1252_curated_2
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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392..562
DNA (171bp) protein (57aa)
50S ribosomal protein L33 n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0A7_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
SCNpilot_bf_inoc_scaffold_1252_curated_3
Veillonella montpellierensis, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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593..799
DNA (207bp) protein (69aa)
Protein translocase subunit SecE n=4 Tax=Veillonella parvula RepID=D1BP80_VEIPT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1401067 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella montpellierensis DNF00314.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
SCNpilot_bf_inoc_scaffold_1252_curated_4
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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841..1368
DNA (528bp) protein (176aa)
Transcription termination/antitermination protein NusG n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLC7_ALKOO
NusG antitermination factor; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_1252_curated_5
Exiguobacterium pavilionensis, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

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1383..1808
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Exiguobacterium pavilionensis RW-2 RepID=U1LY20_9BACL
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1345023 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium pavilionensis RW-2.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_bf_inoc_scaffold_1252_curated_6
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1869..2561
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2E3_CLOA9
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rplA; 50S ribosomal protein L1
SCNpilot_bf_inoc_scaffold_1252_curated_7
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2743..3243
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CY38_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_bf_inoc_scaffold_1252_curated_8
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3283..3648
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium sp. BL8 RepID=T0MUY9_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_bf_inoc_scaffold_1252_curated_9
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3902..7591
DNA (3690bp) protein (1230aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RPOB_ALKMQ rbh
SCNpilot_bf_inoc_scaffold_1252_curated_10
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7623..11147
DNA (3525bp) protein (1175aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CS66_9CLOT
SCNpilot_bf_inoc_scaffold_1252_curated_11
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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11227..11475
DNA (249bp) protein (83aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TRU8_THETC
50S ribosomal protein L7Ae/L30e/S12e/Gadd45; K07590 large subunit ribosomal protein L7A
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:ADL67995.1}; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM; 571 / NCIB 9385 / NCA 3814) (Clostridium thermosaccharolyticum).;"
SCNpilot_bf_inoc_scaffold_1252_curated_12
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11507..11923
DNA (417bp) protein (139aa)
30S ribosomal protein S12 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=RS12_ALKMQ
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_bf_inoc_scaffold_1252_curated_13
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12055..12525
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E6A7_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
SCNpilot_bf_inoc_scaffold_1252_curated_14
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12590..14656
DNA (2067bp) protein (689aa)
Elongation factor G n=1 Tax=Clostridium difficile CD160 RepID=T3DPK5_CLODI
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
fusA; elongation factor G; K02355 elongation factor G
SCNpilot_bf_inoc_scaffold_1252_curated_15
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14679..14762
DNA (84bp) protein (28aa)
DNA-directed DNA polymerase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKY1_9FIRM
DNA repair protein {ECO:0000313|EMBL:AHF07232.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair
Displaying 15 items

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