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SCNpilot_bf_inoc_scaffold_11_curated_55

Organism: scnpilot_dereplicated_Clostridiales_1

near complete RP 49 / 55 MC: 5 BSCG 51 / 51 MC: 4 ASCG 14 / 38 MC: 4
Location: 59843..60328

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Clostridium thermocellum RepID=A3DFD9_CLOTH similarity UNIREF
DB: UNIREF100
  • Identity: 49.1
  • Coverage: 161.0
  • Bit_score: 166
  • Evalue 2.20e-38
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 49.1
  • Coverage: 161.0
  • Bit_score: 166
  • Evalue 6.80e-39
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABN52668.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.1
  • Coverage: 161.0
  • Bit_score: 166
  • Evalue 3.00e-38

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Taxonomy

Ruminiclostridium thermocellum → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 486
ATGAAATCAAAAGAATATACCAAACAGCTAGAAGAATACCTTTTAGAGAAAAGAAATGCGCATTTTCGATTGGCTTATAGCTATGTTAAAAATGATGAAGATGCTTGGGACATATTACAGGATGCAATAGTGAAGGCGTTAAGGGCGATTCACAAGCATCAATATCCAGAGTATATAAACAGCTGGTTTTATAGAATTTTAATCAACGCCTGTTTGGACTTTTTGCGAAAGAGGAAAAGGTTTATTTCGATAGAGGAAACTGATCTTGAAACCGCAATTGACCACTACCAAGACTTGGATTTGCAACAAGCACTTGATAATTTGCCGACAGAATTAAAGACGATAATCATTCTTAGATATTTCGAGGATCAAAAAATTGGTGATATTGCCAAAATACTTGATCTAAATGAAAATACGGTTAAGACAAAATTATACCGTAGCCTAAAGCTGCTAAGAATGGATCTTGAGGAGACAATTTATGAGTAA
PROTEIN sequence
Length: 162
MKSKEYTKQLEEYLLEKRNAHFRLAYSYVKNDEDAWDILQDAIVKALRAIHKHQYPEYINSWFYRILINACLDFLRKRKRFISIEETDLETAIDHYQDLDLQQALDNLPTELKTIIILRYFEDQKIGDIAKILDLNENTVKTKLYRSLKLLRMDLEETIYE*