ggKbase home page

SCNpilot_bf_inoc_scaffold_11_curated

Search features with annotation key words

Displaying items 31-60 of 321 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_11_curated_31
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32413..33510
DNA (1098bp) protein (366aa)
group 1 glycosyl transferase; K13678 monoglucosyldiacylglycerol glycosyltransferase [EC:2.4.1.-]
Glycosyl transferase group 1 n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JN13_CELLD
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADZ82355.1}; Flags: Precursor;; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
SCNpilot_bf_inoc_scaffold_11_curated_32
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33482..34498
DNA (1017bp) protein (339aa)
Lysylphosphatidylglycerol synthetase/UPF0104 n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JN14_CELLD
lysylphosphatidylglycerol synthetase/UPF0104; K07027
Lysylphosphatidylglycerol synthetase/UPF0104 {ECO:0000313|EMBL:ADZ82356.1}; Flags: Precursor;; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
SCNpilot_bf_inoc_scaffold_11_curated_33
unknown

Not on your lists

34515..35573
DNA (1059bp) protein (353aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_34
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35673..36563)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000380B0A7
Uncharacterized protein {ECO:0000313|EMBL:CDZ24132.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
hemerythrin-like metal-binding protein
SCNpilot_bf_inoc_scaffold_11_curated_35
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36603..38339)
DNA (1737bp) protein (579aa)
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUC7_9CLOT
Thiamine ABC transporter permease {ECO:0000313|EMBL:KGG79419.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
multidrug ABC transporter ATPase/permease
SCNpilot_bf_inoc_scaffold_11_curated_36
Oceanobacillus picturae, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

38621..39214
DNA (594bp) protein (198aa)
TetR family transcriptional regulator n=1 Tax=Paenibacillus vortex V453 RepID=E5YY46_9BACL
DNA-binding transcriptional repressor AcrR {ECO:0000313|EMBL:CDO04894.1}; TaxID=171693 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus picturae.;"
transcriptional regulator, TetR family
SCNpilot_bf_inoc_scaffold_11_curated_37
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39217..40164
DNA (948bp) protein (316aa)
Uncharacterized protein n=2 Tax=Clostridiaceae RepID=R0BBT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ61825.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
multidrug ABC transporter ATPase; K09687 antibiotic transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_11_curated_38
unknown

Not on your lists

40175..41491
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B5AC3A
SCNpilot_bf_inoc_scaffold_11_curated_39
Lysinibacillus varians, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(41590..43290)
DNA (1701bp) protein (567aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1145276 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus varians.;"
two-component sensor kinase yesM (EC:2.7.3.-); K07718 two-component system, sensor histidine kinase YesM [EC:2.7.13.3] rbh
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Fusobacterium necrophorum RepID=E5BLA6_9FUSO
SCNpilot_bf_inoc_scaffold_11_curated_40
Fusobacterium hwasookii, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(43287..44063)
DNA (777bp) protein (259aa)
Two-component response regulator yesN n=1 Tax=Fusobacterium nucleatum ChDC F128 RepID=J8VL11_FUSNU
Two-component response regulator yesN {ECO:0000313|EMBL:EJU08141.1}; TaxID=1216362 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium hwasookii ChDC F128.;"
two-component response regulator yesN; K07720 two-component system, response regulator YesN
SCNpilot_bf_inoc_scaffold_11_curated_41
Facklamia languida, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(44096..45208)
DNA (1113bp) protein (371aa)
methionine-S-sulfoxide reductase/methionine-R-sulfoxide reductase; K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
Methionine-R-sulfoxide reductase n=1 Tax=Facklamia languida CCUG 37842 RepID=H3NJQ6_9LACT
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EHR36869.1}; TaxID=883113 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia languida CCUG 37842.;"
SCNpilot_bf_inoc_scaffold_11_curated_42
Paenibacillus sp. FSL P4-0081, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(45221..45853)
DNA (633bp) protein (211aa)
Redoxin family protein n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GQE6_FILAD
Uncharacterized protein {ECO:0000313|EMBL:AIQ27492.1}; TaxID=1536769 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL P4-0081.;"
thioredoxin family protein
SCNpilot_bf_inoc_scaffold_11_curated_43
Filifactor alocis, Filifactor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45864..46553)
DNA (690bp) protein (230aa)
Cytochrome C biogenesis protein transmembrane region n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) RepID=D6GQE7_FILAD
cytochrome c-type biogenesis protein CcdA; K06196 cytochrome c-type biogenesis protein
Cytochrome c-type biogenesis protein CcdA {ECO:0000313|EMBL:EFE29000.2}; TaxID=546269 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Filifactor.;" source="Filifactor alocis (strain ATCC 35896 / D40 B5) (Fusobacterium alocis).;"
SCNpilot_bf_inoc_scaffold_11_curated_44
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

46680..47162
DNA (483bp) protein (161aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;"
Peptide deformylase n=1 Tax=Fusobacterium ulcerans 12-1B RepID=H1PPW3_9FUSO
N-formylmethionyl-tRNA deformylase
SCNpilot_bf_inoc_scaffold_11_curated_45
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

47262..48980
DNA (1719bp) protein (573aa)
Methyl-accepting chemotaxis protein, putative n=1 Tax=Clostridium novyi (strain NT) RepID=A0Q0N8_CLONN
Chemotaxis protein {ECO:0000313|EMBL:KEH94462.1}; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_bf_inoc_scaffold_11_curated_46
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(49101..50162)
DNA (1062bp) protein (354aa)
Similar to sigma 54 response regulatory protein id=1734817 bin=GWB2_Clostridiales_37_7 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
two component system response regulator, modulated diguanylate cyclase
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_11_curated_47
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

50310..51986
DNA (1677bp) protein (559aa)
Putative signal transduction histidine kinase id=1734818 bin=GWB2_Clostridiales_37_7 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
two-component sensor histidine kinase
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_11_curated_48
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52041..54716)
DNA (2676bp) protein (892aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPB4_9CLOT
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EET88992.1}; Flags: Precursor;; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_bf_inoc_scaffold_11_curated_49
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

54942..55358
DNA (417bp) protein (139aa)
Putative Hemerythrin-like protein CA_C0069 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PTF0_CLOSD
hemerythrin-like protein
Putative Hemerythrin-like protein CA_C0069 {ECO:0000313|EMBL:CBH22154.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_11_curated_50
unknown

Not on your lists

55433..55690
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_51
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(55761..56666)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00037B8FC5
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EGL20233.1}; TaxID=944559 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. HGF7.;"
putative Dehydogenase; K03810 virulence factor
SCNpilot_bf_inoc_scaffold_11_curated_52
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56849..57760
DNA (912bp) protein (304aa)
rocF; arginase (EC:3.5.3.1); K01476 arginase [EC:3.5.3.1]
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI00031E1B58
Tax=BJP_IG2103_Clostridiales_50_15
SCNpilot_bf_inoc_scaffold_11_curated_53
unknown

Not on your lists

comp(57839..58141)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_54
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58238..59725
DNA (1488bp) protein (496aa)
DEAD/DEAH box helicase n=1 Tax=Clostridium termitidis CT1112 RepID=S0FHD5_9CLOT
DEAD/DEAH box helicase
Tax=BJP_IG2157_Clostridiales_35_16
SCNpilot_bf_inoc_scaffold_11_curated_55
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59843..60328
DNA (486bp) protein (162aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=6 Tax=Clostridium thermocellum RepID=A3DFD9_CLOTH
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABN52668.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_bf_inoc_scaffold_11_curated_56
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60321..61205
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XT10_9FIRM
hypothetical protein
Tax=BJP_IG2157_Clostridiales_35_16
SCNpilot_bf_inoc_scaffold_11_curated_57
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

61307..62326
DNA (1020bp) protein (340aa)
Transcriptional regulator, LacI family n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLV2_TREBD
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:AEE15644.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
SCNpilot_bf_inoc_scaffold_11_curated_58
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

62609..64060
DNA (1452bp) protein (484aa)
Extracellular solute-binding protein family 1 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KSL9_CLOPH
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:EXG87609.1}; Flags: Precursor;; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
extracellular solute-binding protein
SCNpilot_bf_inoc_scaffold_11_curated_59
unknown

Not on your lists

64100..64207
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_60
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64278..65114
DNA (837bp) protein (279aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium intestinale URNW RepID=U2N0W9_9CLOT
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ERK29147.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
Displaying items 31-60 of 321 in total

View Taxonomy