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SCNpilot_bf_inoc_scaffold_11_curated

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Displaying items 1-30 of 321 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_11_curated_1
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53..322)
DNA (270bp) protein (90aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS00459.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
FcbC2 id=1859205 bin=GWB2_Desulfobacterales_56_26 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
thioesterase
SCNpilot_bf_inoc_scaffold_11_curated_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(337..1284)
DNA (948bp) protein (316aa)
Kinase, pfkB family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SSX7_CLOPS
kinase yeiC
PfkB carbohydrate kinase family protein {ECO:0000313|EMBL:AIY85129.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
SCNpilot_bf_inoc_scaffold_11_curated_3
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1361..1897)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Pelosinus fermentans JBW45 RepID=I8U318_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AJQ29135.1}; TaxID=1192197 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JBW45.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_4
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1897..2373)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Pelosinus fermentans JBW45 RepID=I9NV91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AIF53051.1}; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_5
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2363..2704)
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR-like family n=1 Tax=Thermincola potens (strain JR) RepID=D5XDZ3_THEPJ
transcriptional regulator, PadR-like family
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:ADG81864.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
SCNpilot_bf_inoc_scaffold_11_curated_6
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2996..4012
DNA (1017bp) protein (339aa)
Adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00540, ECO:0000256|SAAS:SAAS00001830}; EC=3.5.4.4 {ECO:0000256|HAMAP-Rule:MF_00540, ECO:0000256|SAAS:SAAS00001830};; Adenosine aminohydrolase {ECO:0000256|HAMAP-Rule:MF_00540}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
add; adenosine deaminase (EC:3.5.4.4); K01488 adenosine deaminase [EC:3.5.4.4]
Adenosine deaminase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RRX0_CLOPF
SCNpilot_bf_inoc_scaffold_11_curated_7
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4166..7060
DNA (2895bp) protein (965aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F5H7_DESDL
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGA69064.1}; Flags: Precursor;; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
SCNpilot_bf_inoc_scaffold_11_curated_8
Paenibacillus sp. FSL R5-0345, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7178..7831
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=1 Tax=Bacillus sp. 10403023 RepID=UPI00028861FA
TetR family transcriptional regulator {ECO:0000313|EMBL:AIQ35821.1}; TaxID=1536770 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-0345.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_11_curated_9
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7862..9880
DNA (2019bp) protein (673aa)
Membrane protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CNB3_9CLOT
Membrane protein {ECO:0000313|EMBL:EOD00201.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
putative exporters of the RND superfamily; K07003
SCNpilot_bf_inoc_scaffold_11_curated_10
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9976..11040
DNA (1065bp) protein (355aa)
Cell wall hydrolase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMG4_CLOSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC67839.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
SCNpilot_bf_inoc_scaffold_11_curated_11
unknown

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11235..11354
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_12
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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11344..11661
DNA (318bp) protein (106aa)
Putative two component response regulator n=1 Tax=Dehalobacter sp. UNSWDHB RepID=T0I4G2_9FIRM
response regulator receiver modulated metal dependent phosphohydrolase
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_bf_inoc_scaffold_11_curated_13
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11683..12288
DNA (606bp) protein (202aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VZB9_DESAS
response regulator receiver modulated metal dependent phosphohydrolase; K07814 putative two-component system response regulator
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_bf_inoc_scaffold_11_curated_14
Pontibacillus marinus, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12285..14396
DNA (2112bp) protein (704aa)
Signal transduction histidine kinase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TH06_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGX83549.1}; TaxID=1385511 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus marinus BH030004 = DSM 16465.;"
multi-sensor hybrid histidine kinase
SCNpilot_bf_inoc_scaffold_11_curated_15
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14404..15213
DNA (810bp) protein (270aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M2U1_CLOB8
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ABR36921.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
SCNpilot_bf_inoc_scaffold_11_curated_16
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15272..16168)
DNA (897bp) protein (299aa)
Nitroreductase family protein n=1 Tax=Peptostreptococcus anaerobius VPI 4330 RepID=L1MP96_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EKX92845.1}; TaxID=1035196 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus anaerobius VPI 4330 = DSM 2949.;"
nitroreductase
SCNpilot_bf_inoc_scaffold_11_curated_17
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16239..16910)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Cloacimonetes bacterium SCGC AAA252-N05 RepID=UPI0003696912
Uncharacterized protein {ECO:0000313|EMBL:KDR96610.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
TetR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_11_curated_18
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17058..18944
DNA (1887bp) protein (629aa)
Oligopeptide transporter n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQ17_9CLOT
Oligopeptide transporter {ECO:0000313|EMBL:EOD00776.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_19
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19496..21409
DNA (1914bp) protein (638aa)
Oligopeptide transporter n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQ17_9CLOT
Oligopeptide transporter {ECO:0000313|EMBL:EOD00776.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_20
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21471..21821
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AVU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00777.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_21
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21858..22205
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUD6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00778.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_22
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22207..23658
DNA (1452bp) protein (484aa)
Aminoacyl-histidine dipeptidase (Peptidase D) {ECO:0000313|EMBL:EOD00779.1}; EC=3.4.13.18 {ECO:0000313|EMBL:EOD00779.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
aminoacyl-histidine dipeptidase; K01270 dipeptidase D [EC:3.4.13.-]
Aminoacyl-histidine dipeptidase (Peptidase D) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CVW2_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_23
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23873..25048
DNA (1176bp) protein (392aa)
Transporter, monovalent cation:proton antiporter-2 family n=2 Tax=Clostridium botulinum RepID=C3L244_CLOB6
Potassium transporter {ECO:0000313|EMBL:KGG80598.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
transporter, monovalent cation:proton antiporter-2 family
SCNpilot_bf_inoc_scaffold_11_curated_24
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25073..25426
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUA0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00242.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_25
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25572..27635
DNA (2064bp) protein (688aa)
Sulfatase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I8F1_9CLOT
Sulfatase {ECO:0000313|EMBL:ETA81282.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
sulfatase
SCNpilot_bf_inoc_scaffold_11_curated_26
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27705..28529
DNA (825bp) protein (275aa)
Zinc transporter ZIP11 (Zrt-and Irt-like protein 11) (ZIP-11) (Solute carrier family 39 member 11) n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PS30_CLOSD
SLC39A; zinc transporter zip11; K07238 zinc transporter, ZIP family
Zinc transporter ZIP11 (Zrt-and Irt-like protein 11) (ZIP-11) (Solute carrier family 39 member 11) {ECO:0000313|EMBL:CBH21684.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_11_curated_27
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28630..29640)
DNA (1011bp) protein (337aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS22299.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
Putative uncharacterized protein id=1751833 bin=GWB2_Clostridiales_37_7 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_28
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(29667..30281)
DNA (615bp) protein (205aa)
Putative uncharacterized protein id=1751838 bin=GWB2_Clostridiales_37_7 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_11_curated_29
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30465..30836
DNA (372bp) protein (124aa)
Predicted chemotaxis protein CheY n=2 Tax=Clostridium RepID=D8GKD3_CLOLD
cheY2; chemotaxis protein CheY; K03413 two-component system, chemotaxis family, response regulator CheY
Predicted chemotaxis protein CheY {ECO:0000313|EMBL:ADK15273.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
SCNpilot_bf_inoc_scaffold_11_curated_30
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30861..32180
DNA (1320bp) protein (440aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSU8_CLOSD
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor {ECO:0000313|EMBL:KDR96471.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
diguanylate cyclase/phosphodiesterase
Displaying items 1-30 of 321 in total

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