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SCNpilot_bf_inoc_scaffold_11_curated

Search features with annotation key words

Displaying items 301-321 of 321 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_11_curated_301
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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350450..350650
DNA (201bp) protein (67aa)
cold-shock protein n=1 Tax=Clostridium arbusti RepID=UPI000289F5FC
cold shock protein
Cold-shock protein {ECO:0000313|EMBL:KEZ87322.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
SCNpilot_bf_inoc_scaffold_11_curated_302
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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350817..351653
DNA (837bp) protein (279aa)
RNA-binding protein n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9F1J6_CLOSG
RNA-binding protein {ECO:0000313|EMBL:KJF26678.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
RNA-binding protein; K00243 hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_303
unknown

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351690..352049
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_304
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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352171..352716
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNQ0_ALKMQ
hypothetical protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_11_curated_305
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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352825..355302
DNA (2478bp) protein (826aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
Peptidase U32 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DJT2_CLODI
Peptidase U32 family protein {ECO:0000313|EMBL:EQF26676.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
SCNpilot_bf_inoc_scaffold_11_curated_306
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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355331..357700
DNA (2370bp) protein (790aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Endonuclease MutS2 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUV3_9CLOT
MutS2 family protein; K07456 DNA mismatch repair protein MutS2
SCNpilot_bf_inoc_scaffold_11_curated_307
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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357710..358456
DNA (747bp) protein (249aa)
UPF0271 protein SLGD_01314 n=4 Tax=Staphylococcus lugdunensis RepID=D3QCF2_STALH
Lactam utilization protein LAMB; K07160 UPF0271 protein
UPF0271 protein HMPREF0790_0207 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus lugdunensis M23590.;"
SCNpilot_bf_inoc_scaffold_11_curated_308
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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358453..360531
DNA (2079bp) protein (693aa)
urea amidolyase-like protein (EC:6.3.4.6)
Urea amidolyase related protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QUX9_ACEAZ
Urea amidolyase-like protein {ECO:0000313|EMBL:KAJ51836.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
SCNpilot_bf_inoc_scaffold_11_curated_309
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(360533..361360)
DNA (828bp) protein (276aa)
Putative membrane protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LWV5_CLOCD
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AEV69816.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_bf_inoc_scaffold_11_curated_310
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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361753..363453
DNA (1701bp) protein (567aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
argS; arginyl-tRNA synthetase 2 (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWC9_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_311
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

363620..364150
DNA (531bp) protein (177aa)
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; K00172 pyruvate ferredoxin oxidoreductase, gamma subunit [EC:1.2.7.1]
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2C0_CLOCD
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family {ECO:0000313|EMBL:AEV69279.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_bf_inoc_scaffold_11_curated_312
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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364150..364452
DNA (303bp) protein (101aa)
pyruvate ferredoxin/flavodoxin oxidoreductase; K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1]
Pyruvate ferredoxin/flavodoxin oxidoreductase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GI12_EUBLK
Pyruvate ferredoxin/flavodoxin oxidoreductase {ECO:0000313|EMBL:ADO35297.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
SCNpilot_bf_inoc_scaffold_11_curated_313
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

364452..365636
DNA (1185bp) protein (395aa)
2-oxoacid:ferredoxin oxidoreductase subunit alpha; K00169 pyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.1]
2-oxoacid:ferredoxin oxidoreductase, alpha subunit n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2B8_CLOCD
2-oxoacid:ferredoxin oxidoreductase, alpha subunit {ECO:0000313|EMBL:AEV69277.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
SCNpilot_bf_inoc_scaffold_11_curated_314
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

365633..366529
DNA (897bp) protein (299aa)
2-ketoisovalerate ferredoxin oxidoreductase {ECO:0000313|EMBL:KJF28568.1}; EC=1.2.7.7 {ECO:0000313|EMBL:KJF28568.1};; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
2-oxoacid:ferredoxin oxidoreductase subunit beta (EC:1.2.7.1); K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1]
2-ketoisovalerate ferredoxin oxidoreductase subunit beta n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002F5768C
SCNpilot_bf_inoc_scaffold_11_curated_315
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(366661..367023)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00036ABEAE
hypothetical protein
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:AEJ20092.1}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
SCNpilot_bf_inoc_scaffold_11_curated_316
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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367325..369100
DNA (1776bp) protein (592aa)
Radical SAM superfamily protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0D2T0_CLOSO
Radical SAM domain-containing protein {ECO:0000313|EMBL:CEO28205.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
adenosylcobamide-dependent radical SAM superfamily protein
SCNpilot_bf_inoc_scaffold_11_curated_317
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

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369103..369924
DNA (822bp) protein (274aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Lactobacillus johnsonii (strain FI9785) RepID=D0R576_LACJF
SCNpilot_bf_inoc_scaffold_11_curated_318
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

369970..371112
DNA (1143bp) protein (381aa)
TPR repeat-containing protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNY3_ALKMQ
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ABR47901.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_11_curated_319
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

371368..372276
DNA (909bp) protein (303aa)
phosphate butyryltransferase (EC:2.3.1.19)
Phosphate butyryltransferase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PXW0_CLOSD
Phosphate butyryltransferase {ECO:0000313|EMBL:KGG79622.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
SCNpilot_bf_inoc_scaffold_11_curated_320
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

372307..374085
DNA (1779bp) protein (593aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEG9_ALKOO
SCNpilot_bf_inoc_scaffold_11_curated_321
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

374088..374669
DNA (582bp) protein (194aa)
indolepyruvate oxidoreductase subunit beta (EC:1.2.7.8); K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:ABW17641.1}; EC=1.2.7.8 {ECO:0000313|EMBL:ABW17641.1};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEH0_ALKOO
Displaying items 301-321 of 321 in total

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