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SCNpilot_bf_inoc_scaffold_11_curated

Search features with annotation key words

Displaying items 181-210 of 321 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_11_curated_181
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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209749..211728
DNA (1980bp) protein (660aa)
UvrABC system protein B n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJ09_ALKOO
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_11_curated_182
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

211748..214663
DNA (2916bp) protein (972aa)
UvrABC system protein A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUX4_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
uvrA; exinuclease ABC system subunit A
SCNpilot_bf_inoc_scaffold_11_curated_183
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

214958..216889
DNA (1932bp) protein (644aa)
UvrABC system protein C n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=UVRC_ALKMQ rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
SCNpilot_bf_inoc_scaffold_11_curated_184

Not on your lists

217153..217635
DNA (483bp) protein (161aa)
NADH dehydrogenase (ubiquinone) 24 kDa subunit; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E4Z0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05208.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_bf_inoc_scaffold_11_curated_185

Not on your lists

217646..218011
DNA (366bp) protein (122aa)
Ferredoxin n=1 Tax=uncultured bacterium RepID=K2E6Q1_9BACT
Ferredoxin {ECO:0000313|EMBL:EKE05207.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ferredoxin
SCNpilot_bf_inoc_scaffold_11_curated_186
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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218043..219839
DNA (1797bp) protein (599aa)
NAD-reducing hydrogenase subunit HoxF {ECO:0000313|EMBL:EOC99418.1}; EC=1.12.1.2 {ECO:0000313|EMBL:EOC99418.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NAD-reducing hydrogenase subunit HoxF n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CRU0_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_187
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

219878..221629
DNA (1752bp) protein (584aa)
hydrogenase, Fe-only; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
Periplasmic [Fe] hydrogenase large subunit n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AQL8_9CLOT
Ferredoxin {ECO:0000313|EMBL:KGG79558.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
SCNpilot_bf_inoc_scaffold_11_curated_188
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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221843..222475
DNA (633bp) protein (211aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=445337 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C str. Eklund.;"
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BDU8_CLOBO
SCNpilot_bf_inoc_scaffold_11_curated_189
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

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222537..222884
DNA (348bp) protein (116aa)
FIG168740: DRTGG domain-containing protein n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RPR8_9CLOT
FIG168740: DRTGG domain-containing protein {ECO:0000313|EMBL:CDF57371.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
DRTGG domain.
SCNpilot_bf_inoc_scaffold_11_curated_190
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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222932..223378
DNA (447bp) protein (149aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase id=2275013 bin=GWB2_Clostridiales_37_7 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
putative anti-sigma regulatory factor
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_11_curated_191
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

223402..224646
DNA (1245bp) protein (415aa)
Ferredoxin 2 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARR5_9CLOT
Ferredoxin 2 {ECO:0000313|EMBL:EOC99842.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
NapF2; ferredoxin 2 rbh
SCNpilot_bf_inoc_scaffold_11_curated_192
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

224697..225029
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RMU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF57374.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
HPr kinase
SCNpilot_bf_inoc_scaffold_11_curated_193
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

225089..225733
DNA (645bp) protein (215aa)
Metal-dependent phosphoesterases (PHP family) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMB0_9CLOT
Phosphoesterase {ECO:0000313|EMBL:KGG81194.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Predicted metal-dependent phosphoesterases (PHP family)
SCNpilot_bf_inoc_scaffold_11_curated_194
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

225730..226278
DNA (549bp) protein (183aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCP26859.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
Histidine kinase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LQL7_TEPAE
Histidine kinase
SCNpilot_bf_inoc_scaffold_11_curated_195
unknown

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226348..226518
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_196
Paenibacillus sp. FSL H7-0357, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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226537..227250
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Paenibacillus sp. HW567 RepID=UPI000365AEDD
Sortase {ECO:0000313|EMBL:AIQ15820.1}; TaxID=1536774 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0357.;"
sortase family protein
SCNpilot_bf_inoc_scaffold_11_curated_197
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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227565..228356
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Paenibacillus sp. HW567 RepID=UPI00036D870C
Transglutaminase {ECO:0000313|EMBL:AIQ56108.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
transglutaminase-like enzyme, cysteine protease
SCNpilot_bf_inoc_scaffold_11_curated_198
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

228498..230345
DNA (1848bp) protein (616aa)
GTP-binding protein TypA/BipA n=1 Tax=Clostridium difficile 6042 RepID=T3KNK5_CLODI
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KDR96201.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
bipA; GTP-binding protein; K06207 GTP-binding protein
SCNpilot_bf_inoc_scaffold_11_curated_199
unknown

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230563..230955
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_200
unknown

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230942..232894
DNA (1953bp) protein (651aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_201
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

232904..233494
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXK0_MAHA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE97681.1}; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
SCNpilot_bf_inoc_scaffold_11_curated_202
Perkinsus marinus, Perkinsus, Perkinsida, Eukaryota

Not on your lists

233507..234220
DNA (714bp) protein (238aa)
Serine/threonine kinase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G483_9DELT
Protein kinase domain.
5-amp-activated protein kinase, putative {ECO:0000313|EMBL:EEQ99956.1}; TaxID=423536 species="Eukaryota; Alveolata; Perkinsea; Perkinsida; Perkinsidae; Perkinsus.;" source="Perkinsus marinus (strain ATCC 50983 / TXsc).;"
SCNpilot_bf_inoc_scaffold_11_curated_203
unknown

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234289..234444
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_204
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

234799..235677
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1R4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEA84281.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_205
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

235628..236458
DNA (831bp) protein (277aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BD66_CLOBO
SCNpilot_bf_inoc_scaffold_11_curated_206
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

236614..237471
DNA (858bp) protein (286aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiriti
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CUW8_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_207
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

237485..237868
DNA (384bp) protein (128aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
panD; aspartate 1-decarboxylase PanD (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Succinatimonas sp. CAG:777 RepID=R5ETW4_9GAMM
SCNpilot_bf_inoc_scaffold_11_curated_208
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

237935..238837
DNA (903bp) protein (301aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158]
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Alkaliphilus oremlandii RepID=UPI0000D826D9
SCNpilot_bf_inoc_scaffold_11_curated_209
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

238953..239675
DNA (723bp) protein (241aa)
PHP domain-containing protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B1P3_CLOA9
PHP domain-containing protein
PHP domain-containing protein {ECO:0000313|EMBL:AFS79032.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_11_curated_210
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

239685..240545
DNA (861bp) protein (287aa)
UPF0042 nucleotide-binding protein Cst_c14140 n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VJV5_CLOSH
kinase
Nucleotide-binding protein Cst_c14140 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Displaying items 181-210 of 321 in total

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