ggKbase home page

SCNpilot_bf_inoc_scaffold_11_curated

Search features with annotation key words

Displaying items 241-270 of 321 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_11_curated_241
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

276542..277399
DNA (858bp) protein (286aa)
Two-component response regulator, controling glutamine utilization n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CYG6_9CLOT
Two-component response regulator, controling glutamine utilization {ECO:0000313|EMBL:EOD01619.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Response regulator of citrate/malate metabolism
SCNpilot_bf_inoc_scaffold_11_curated_242
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

277538..278935
DNA (1398bp) protein (466aa)
Na+/H+ antiporter NhaC n=1 Tax=Fusobacterium ulcerans 12-1B RepID=H1PR35_9FUSO
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:EHO82848.1}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;"
nhaC; na+/h+ antiporter nhac; K03315 Na+:H+ antiporter, NhaC family
SCNpilot_bf_inoc_scaffold_11_curated_243
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

279137..279832
DNA (696bp) protein (232aa)
Putative transcriptional regulator n=1 Tax=Acetonema longum DSM 6540 RepID=F7NLW5_9FIRM
Putative transcriptional regulator {ECO:0000313|EMBL:EGO62975.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
Crp/Fnr family transcriptional regulator
SCNpilot_bf_inoc_scaffold_11_curated_244
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

279850..281007
DNA (1158bp) protein (386aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Clostridium sp. BL8 RepID=T0MWL0_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_245
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

280988..282208
DNA (1221bp) protein (407aa)
amidohydrolase (EC:3.5.1.32)
Amidohydrolase {ECO:0000313|EMBL:ABR50410.1}; EC=3.5.1.32 {ECO:0000313|EMBL:ABR50410.1};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI000300E937
SCNpilot_bf_inoc_scaffold_11_curated_246
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

282278..284380
DNA (2103bp) protein (701aa)
Diguanylate cyclase domain protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EEM3_9FIRM
Diguanylate cyclase domain protein {ECO:0000313|EMBL:ERI92987.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
diguanylate cyclase
SCNpilot_bf_inoc_scaffold_11_curated_247
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

284624..284884
DNA (261bp) protein (87aa)
Putative iron-only hydrogenase system regulator n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7SWF7_CLOSG
Clostridium botulinum B2 450 B2_450_contig009, whole genome shotgun sequence {ECO:0000313|EMBL:KIS21865.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum B2 450.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_248
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

284900..286315
DNA (1416bp) protein (472aa)
Thiamine biosynthesis protein ThiH n=2 Tax=Clostridium botulinum RepID=L1LN61_CLOBO
thiH; thiamine biosynthesis protein ThiH; K03150 thiamine biosynthesis ThiH
Putative thiazole biosynthesis protein {ECO:0000313|EMBL:ACA44705.1}; TaxID=498213 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Okra / Type B1).;"
SCNpilot_bf_inoc_scaffold_11_curated_249
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

286326..287522
DNA (1197bp) protein (399aa)
Hydrogenase maturation GTPase HydF n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKG7_9CLOT
Hydrogenase maturation GTPase HydF {ECO:0000313|EMBL:EKY28458.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
GTP-binding protein
SCNpilot_bf_inoc_scaffold_11_curated_250
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

287523..288446
DNA (924bp) protein (308aa)
Radical SAM domain-containing protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2P7_CLOA9
radical SAM domain-containing protein
Radical SAM domain-containing protein {ECO:0000313|EMBL:AFS79769.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_11_curated_251
unknown

Not on your lists

comp(288586..289692)
DNA (1107bp) protein (369aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_252
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(290007..290642)
DNA (636bp) protein (212aa)
Phosphohydrolase n=1 Tax=Clostridium ultunense Esp RepID=M1ZA94_9CLOT
Phosphohydrolase {ECO:0000313|EMBL:CCQ95151.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
NUDIX hydrolase
SCNpilot_bf_inoc_scaffold_11_curated_253
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

290773..291282
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI00028858F4
hypothetical protein
Tax=BJP_IG2157_Clostridiales_35_16
SCNpilot_bf_inoc_scaffold_11_curated_254
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

291303..292058
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI000313B0CB
phospho-2-dehydro-3-deoxyheptonate aldolase
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:ABR48323.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_11_curated_255
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(292162..293214)
DNA (1053bp) protein (351aa)
HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
Protein HflC n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RUZ8_9CLOT
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
SCNpilot_bf_inoc_scaffold_11_curated_256
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(293214..294152)
DNA (939bp) protein (313aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
HflK protein n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RUT5_9CLOT
HflK protein {ECO:0000313|EMBL:CDF59321.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
SCNpilot_bf_inoc_scaffold_11_curated_257
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

294383..295231
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002D52939
YihY family inner membrane domain protein {ECO:0000313|EMBL:KIE45003.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
ribonuclease
SCNpilot_bf_inoc_scaffold_11_curated_258
unknown

Not on your lists

comp(295212..295829)
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_259
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

295999..300897
DNA (4899bp) protein (1633aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AYP6_9CLOT
Cytidylyltransferase {ECO:0000313|EMBL:EYE89184.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
cytidyltransferase-like protein
SCNpilot_bf_inoc_scaffold_11_curated_260
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

300903..302141
DNA (1239bp) protein (413aa)
Malate/lactate dehydrogenases (EC:1.1.1.27)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QTY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC25407.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
SCNpilot_bf_inoc_scaffold_11_curated_261
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

302120..303184
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RNY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF57769.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
NADPH-dependent FMN reductase
SCNpilot_bf_inoc_scaffold_11_curated_262
Streptococcus parasanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(303754..305487)
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Streptococcus parasanguinis ATCC 903 RepID=E8K708_STRPA
Uncharacterized protein {ECO:0000313|EMBL:EFX38398.1}; TaxID=888048 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus parasanguinis ATCC 903.;"
AAA ATPase
SCNpilot_bf_inoc_scaffold_11_curated_263
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

305678..306904
DNA (1227bp) protein (409aa)
Ser/Thr phosphatase family protein (Fragment) n=1 Tax=Staphylococcus aureus subsp. aureus IS-111 RepID=H3YMA3_STAAU
putative DNA repair exonuclease
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EES92510.1}; TaxID=450394 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus USA300_TCH959.;"
SCNpilot_bf_inoc_scaffold_11_curated_264
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

306894..309482
DNA (2589bp) protein (863aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SR22_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG86119.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
SCNpilot_bf_inoc_scaffold_11_curated_265
unknown

Not on your lists

309475..309741
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_266
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

309820..310620
DNA (801bp) protein (267aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein
Phosphonate-transporting ATPase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLN1_CELLD
Uncharacterized protein {ECO:0000313|EMBL:KIE44427.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
SCNpilot_bf_inoc_scaffold_11_curated_267
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

310646..312682
DNA (2037bp) protein (679aa)
CARDB domain-containing protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FUF7_9CLOT
S-layer domain-containing protein {ECO:0000313|EMBL:KDR94724.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
S-layer domain-containing protein
SCNpilot_bf_inoc_scaffold_11_curated_268
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

312675..314009
DNA (1335bp) protein (445aa)
ABC transporter permease subunit n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMA0_CLOSH
Putative ABC transporter permease {ECO:0000313|EMBL:KDR94725.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
ABC transporter permease subunit
SCNpilot_bf_inoc_scaffold_11_curated_269
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

314127..314957
DNA (831bp) protein (277aa)
hypothetical protein; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain amino acid aminotransferase n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RV09_9CLOT
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KGG80488.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
SCNpilot_bf_inoc_scaffold_11_curated_270
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

314954..316174
DNA (1221bp) protein (407aa)
PepD; peptidase T (EC:3.4.11.4); K01258 tripeptide aminopeptidase [EC:3.4.11.4] rbh
Peptidase T {ECO:0000255|HAMAP-Rule:MF_00550}; EC=3.4.11.4 {ECO:0000255|HAMAP-Rule:MF_00550};; Aminotripeptidase {ECO:0000255|HAMAP-Rule:MF_00550}; Short=Tripeptidase {ECO:0000255|HAMAP-Rule:MF_00550};; Tripeptide aminopeptidase {ECO:0000255|HAMAP-Rule:MF_00550}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 /; JCM 11007 / NBRC 100824 / MB4) (Thermoanaer
Peptidase T n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=PEPT_THETN rbh
Displaying items 241-270 of 321 in total

View Taxonomy