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SCNpilot_bf_inoc_scaffold_11_curated

Search features with annotation key words

Displaying items 271-300 of 321 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_11_curated_271

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comp(316264..316803)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036EF9C7
Marine sediment metagenome DNA, contig: S12H4_S00312 {ECO:0000313|EMBL:GAI78945.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_272
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


317415..320057
DNA (2643bp) protein (881aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Clostridium difficile T23 RepID=U3YAF2_CLODI
SCNpilot_bf_inoc_scaffold_11_curated_273
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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320066..321346
DNA (1281bp) protein (427aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
FolC bifunctional protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MID3_ALKOO
FolC bifunctional protein {ECO:0000313|EMBL:ABW19565.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_11_curated_274
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(321509..323176)
DNA (1668bp) protein (556aa)
peptidase C1A papain n=1 Tax=Clostridium arbusti RepID=UPI0002885917
Chitin binding protein {ECO:0000313|EMBL:AKB56772.1}; TaxID=1434106 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 227.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_275
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(323253..323786)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CLF3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGG79879.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_276
unknown

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323922..324053
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_11_curated_277
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(324171..325346)
DNA (1176bp) protein (392aa)
Putative membrane protein n=2 Tax=Turicibacter RepID=D4W835_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EFF62855.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_278
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

325531..326064
DNA (534bp) protein (178aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EQF22999.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EQF22999.1};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hpt; hypoxanthine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase n=1 Tax=Clostridium difficile CD160 RepID=T3D562_CLODI
SCNpilot_bf_inoc_scaffold_11_curated_279
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(326116..326823)
DNA (708bp) protein (236aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023633}; EC=2.3.1.89 {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023632};; Tetrahydrodipicolinate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691}; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus pallens ATCC BAA-351.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2Q9H4_9ENTE
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
SCNpilot_bf_inoc_scaffold_11_curated_280
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(327000..327773)
DNA (774bp) protein (258aa)
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GF86_EUBLK
SCNpilot_bf_inoc_scaffold_11_curated_281
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(327766..328650)
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Caloramator australicus RC3 RepID=G0V4T7_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_282
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(328647..329648)
DNA (1002bp) protein (334aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
aspartate-semialdehyde dehydrogenase id=1774734 bin=GWB2_Clostridiales_37_7 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Tax=BJP_IG2103_Clostridiales_50_15
SCNpilot_bf_inoc_scaffold_11_curated_283
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

329879..331027
DNA (1149bp) protein (383aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
N-acyl-L-amino acid amidohydrolase protein n=1 Tax=Haloplasma contractile SSD-17B RepID=U2FI30_9BACT
Amidohydrolase {ECO:0000313|EMBL:KJF28421.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
SCNpilot_bf_inoc_scaffold_11_curated_284
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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331061..331990
DNA (930bp) protein (310aa)
Abortive infection protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIB9_ALKOO
abortive infection protein; K07052
Abortive infection protein {ECO:0000313|EMBL:ABW19551.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_11_curated_285
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

331999..332739
DNA (741bp) protein (247aa)
Methyltransferase type 11 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIB1_ALKOO
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ABW19543.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_11_curated_286
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

332751..333644
DNA (894bp) protein (298aa)
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
33 kDa chaperonin id=1774821 bin=GWB2_Clostridiales_37_7 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hslO; disulfide bond chaperone; K04083 molecular chaperone Hsp33
SCNpilot_bf_inoc_scaffold_11_curated_287
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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333681..334388
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYB4_MAHA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE95639.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
SCNpilot_bf_inoc_scaffold_11_curated_288
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

334393..334989
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00911.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_11_curated_289
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

335478..337412
DNA (1935bp) protein (645aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUT9_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_290
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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337700..338215
DNA (516bp) protein (172aa)
Translation initiation factor IF-3 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLQ0_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
SCNpilot_bf_inoc_scaffold_11_curated_291
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


338245..338442
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=3 Tax=Staphylococcus RepID=I7JHK6_9STAP
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_bf_inoc_scaffold_11_curated_292
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


338472..338825
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUU5_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
SCNpilot_bf_inoc_scaffold_11_curated_293
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

339117..340121
DNA (1005bp) protein (335aa)
phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8]
Uncharacterized protein n=2 Tax=Blautia RepID=R5BYA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX59209.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
SCNpilot_bf_inoc_scaffold_11_curated_294
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

340320..341678
DNA (1359bp) protein (453aa)
TrkH family potassium uptake protein (EC:3.6.3.14); K03498 trk system potassium uptake protein TrkH
Potassium uptake protein, integral membrane component, KtrB n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWB3_9CLOT
ATP synthase subunit J {ECO:0000313|EMBL:KJF28417.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
SCNpilot_bf_inoc_scaffold_11_curated_295
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

341733..342380
DNA (648bp) protein (216aa)
TrkA-N domain protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MI80_ALKOO
TrkA domain-containing protein; K03499 trk system potassium uptake protein TrkA
TrkA-N domain protein {ECO:0000313|EMBL:ABW19512.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_11_curated_296
Peptostreptococcus anaerobius, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

342382..343212
DNA (831bp) protein (277aa)
RNA methyltransferase, TrmH family n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MPW4_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFD05833.1}; TaxID=596329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus.;" source="Peptostreptococcus anaerobius 653-L.;"
RNA methyltransferase; K03437 RNA methyltransferase, TrmH family
SCNpilot_bf_inoc_scaffold_11_curated_297
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


343600..344619
DNA (1020bp) protein (340aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W3F8_CLOBI
phenylalanyl-tRNA synthetase subunit alpha
SCNpilot_bf_inoc_scaffold_11_curated_298
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


344637..347027
DNA (2391bp) protein (797aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CWB8_9CLOT
SCNpilot_bf_inoc_scaffold_11_curated_299
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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347188..348525
DNA (1338bp) protein (446aa)
Mate efflux family protein n=2 Tax=Clostridium botulinum B RepID=B2TS09_CLOBB
mate efflux family protein
Multidrug transporter MatE {ECO:0000313|EMBL:KIL06957.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
SCNpilot_bf_inoc_scaffold_11_curated_300
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

348614..350233
DNA (1620bp) protein (540aa)
ABC transporter, ATP-binding protein n=1 Tax=Bacillus cereus Rock3-44 RepID=C2W928_BACCE
ABC transporter ATP-binding protein
Tax=BJP_IG2157_Clostridiales_35_16
Displaying items 271-300 of 321 in total

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