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SCNpilot_bf_inoc_scaffold_2428_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_2428_curated_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..199
DNA (198bp) protein (66aa)
Elongation factor Tu n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYJ6_FRAAD
translation elongation factor TU
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_bf_inoc_scaffold_2428_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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459..848
DNA (390bp) protein (130aa)
Protein translocase subunit SecE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VIS8_9GAMM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
preprotein translocase, SecE subunit
SCNpilot_bf_inoc_scaffold_2428_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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859..1419
DNA (561bp) protein (187aa)
Transcription termination/antitermination protein NusG n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8S9_9GAMM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcription antitermination protein nusG
SCNpilot_bf_inoc_scaffold_2428_curated_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1790..2218
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Dyella japonica RepID=UPI00030415B6
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
LSU ribosomal protein L11P
SCNpilot_bf_inoc_scaffold_2428_curated_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2222..2929
DNA (708bp) protein (236aa)
50S ribosomal protein L1 n=1 Tax=Dyella ginsengisoli RepID=UPI00034BD5CC
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribosomal protein L1
SCNpilot_bf_inoc_scaffold_2428_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3270..3794
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8T3_9GAMM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal protein L10
SCNpilot_bf_inoc_scaffold_2428_curated_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3841..4212
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8T5_9GAMM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LSU ribosomal protein L12P
SCNpilot_bf_inoc_scaffold_2428_curated_8
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4422..7145)
DNA (2724bp) protein (908aa)
Uncharacterized protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZFZ2_9XANT
Uncharacterized protein {ECO:0000313|EMBL:ETC89470.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2428_curated_9
RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7262..7516)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XB04_9BACT
Tax=RBG_19FT_COMBO_Deltaproteobacteria_58_16_curated
SCNpilot_bf_inoc_scaffold_2428_curated_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8341..8907
DNA (567bp) protein (189aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Dyella japonica RepID=UPI0003162D7E
SCNpilot_bf_inoc_scaffold_2428_curated_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9008..13222
DNA (4215bp) protein (1405aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Dyella ginsengisoli RepID=UPI0003455CD3
SCNpilot_bf_inoc_scaffold_2428_curated_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13401..13775
DNA (375bp) protein (125aa)
30S ribosomal protein S12 n=1 Tax=Dyella japonica RepID=UPI000301B0DE
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SSU ribosomal protein S12P
SCNpilot_bf_inoc_scaffold_2428_curated_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13841..14308
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=2 Tax=Rhodanobacter RepID=I4WGB9_9GAMM
SSU ribosomal protein S7P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_2428_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14442..16571
DNA (2130bp) protein (710aa)
Elongation factor G n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL10_9GAMM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
translation elongation factor 2 (EF-2/EF-G)
SCNpilot_bf_inoc_scaffold_2428_curated_15
unknown

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16695..16763
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 15 items

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